Silkworm BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000102-TA|BGIBMGA000102-PA|undefined
         (777 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069766-1|AAL39911.1|  836|Drosophila melanogaster RE01471p pro...    34   0.65 
AE014296-2431|AAF49703.1|  836|Drosophila melanogaster CG13472-P...    34   0.65 
AJ238577-1|CAB43739.2|  796|Drosophila melanogaster titin protein.     32   3.5  
AY069480-1|AAL39625.1|  498|Drosophila melanogaster LD21659p pro...    31   4.6  
AE014297-1369|AAF54692.2|  498|Drosophila melanogaster CG14722-P...    31   4.6  
X66982-1|CAA47391.1|  577|Drosophila melanogaster factor 5 protein.    31   6.1  
AY052020-1|AAK93444.1|  419|Drosophila melanogaster LD47540p pro...    31   6.1  
AY051733-1|AAK93157.1|  577|Drosophila melanogaster LD26157p pro...    31   6.1  
AE014297-3396|AAF56194.2| 2072|Drosophila melanogaster CG10192-P...    31   6.1  
AE014297-456|AAF54125.1|  577|Drosophila melanogaster CG10281-PA...    31   6.1  
AE013599-141|AAF57284.1|  419|Drosophila melanogaster CG7845-PA ...    31   6.1  
AY113652-1|AAM29657.1|  918|Drosophila melanogaster SD14970p pro...    31   8.0  
AY051943-1|AAK93367.1|  581|Drosophila melanogaster LD41978p pro...    31   8.0  
AY008258-1|AAG16637.1| 2035|Drosophila melanogaster ecdysone rec...    31   8.0  
AE014297-841|AAF54309.1|  581|Drosophila melanogaster CG11964-PA...    31   8.0  
AE014296-1695|AAF50237.1|  918|Drosophila melanogaster CG3335-PA...    31   8.0  
AE014134-1613|AAF52754.2| 2047|Drosophila melanogaster CG13109-P...    31   8.0  
AE013599-1792|AAF58320.2| 8805|Drosophila melanogaster CG18076-P...    31   8.0  

>AY069766-1|AAL39911.1|  836|Drosophila melanogaster RE01471p
           protein.
          Length = 836

 Score = 34.3 bits (75), Expect = 0.65
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 114 QPDWETNPNKRFSGNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAA 160
           +PD ET   K  +GN RGS+   N R G   A      G+ + +PAA
Sbjct: 501 KPDHETTNGKDHTGNRRGSERGSN-RGGSNRAENGNANGNRRNKPAA 546


>AE014296-2431|AAF49703.1|  836|Drosophila melanogaster CG13472-PA
           protein.
          Length = 836

 Score = 34.3 bits (75), Expect = 0.65
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 114 QPDWETNPNKRFSGNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAA 160
           +PD ET   K  +GN RGS+   N R G   A      G+ + +PAA
Sbjct: 501 KPDHETTNGKDHTGNRRGSERGSN-RGGSNRAENGNANGNRRNKPAA 546


>AJ238577-1|CAB43739.2|  796|Drosophila melanogaster titin protein.
          Length = 796

 Score = 31.9 bits (69), Expect = 3.5
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 679 IKVPVEKNDDVVVAPETTADKPVSELPNENKTVDTENNDESKANEQTGDMAEEAK 733
           +K P   + D VVA  T   K  +E+  E  +VD +   E K  E+T D   + K
Sbjct: 147 LKKPEPVDADEVVAEVTLKPKAKTEVTEEEFSVDVKLPKEKKVTEETSDQTVQLK 201


>AY069480-1|AAL39625.1|  498|Drosophila melanogaster LD21659p
           protein.
          Length = 498

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 84  NNVDSDYTRYYDESVGSGDFIPLNSRKRSYQPDWETNPNKRFSGNARGSDSQFNFRSGRR 143
           N  DSD   Y  + V  G  +P N    SY+ +  ++ +  F  NA  SDS  +      
Sbjct: 37  NESDSDNDEY--DLVDMGAPVPDNDGDISYEGNDSSSSDDSFDPNAADSDSDDSMLDEAG 94

Query: 144 SANRFQGQGSSKRQPAAEPQFSNKGP 169
                    + KR+    P  SNK P
Sbjct: 95  GVTAGGATSAKKRKDDDNPSGSNKQP 120


>AE014297-1369|AAF54692.2|  498|Drosophila melanogaster CG14722-PA
           protein.
          Length = 498

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 84  NNVDSDYTRYYDESVGSGDFIPLNSRKRSYQPDWETNPNKRFSGNARGSDSQFNFRSGRR 143
           N  DSD   Y  + V  G  +P N    SY+ +  ++ +  F  NA  SDS  +      
Sbjct: 37  NESDSDNDEY--DLVDMGAPVPDNDGDISYEGNDSSSSDDSFDPNAADSDSDDSMLDEAG 94

Query: 144 SANRFQGQGSSKRQPAAEPQFSNKGP 169
                    + KR+    P  SNK P
Sbjct: 95  GVTAGGATSAKKRKDDDNPSGSNKQP 120


>X66982-1|CAA47391.1|  577|Drosophila melanogaster factor 5 protein.
          Length = 577

 Score = 31.1 bits (67), Expect = 6.1
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 517 IDSDIIGSELDHQINDLLTSIREAEEKVQMDTNPKQTVDANINKEGDEGADTVT 570
           +D D+ G   +  +  LLTS  E +++ + D + K+  D    K+ D+G D V+
Sbjct: 323 VDKDMKGVAEEDALRKLLTSDEEEDDEKKSDESDKEDADGE-KKKKDKGKDEVS 375


>AY052020-1|AAK93444.1|  419|Drosophila melanogaster LD47540p
           protein.
          Length = 419

 Score = 31.1 bits (67), Expect = 6.1
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 682 PVEKNDDVVVAPETTADKPVSELPNENKTV-----DTENNDESKANEQTGDMAEEAKDVI 736
           P E    V   PE  AD  +    +ENK+V     D E  D        GD   E+++ +
Sbjct: 331 PFENEARVTEEPEEVADLQMDRNVSENKSVNATSVDNEYEDMFDQMPTVGDSDNESEEEM 390

Query: 737 SNLKSEVPATPTRSS 751
           SN+K        RSS
Sbjct: 391 SNIKLSKADLKRRSS 405


>AY051733-1|AAK93157.1|  577|Drosophila melanogaster LD26157p
           protein.
          Length = 577

 Score = 31.1 bits (67), Expect = 6.1
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 517 IDSDIIGSELDHQINDLLTSIREAEEKVQMDTNPKQTVDANINKEGDEGADTVT 570
           +D D+ G   +  +  LLTS  E +++ + D + K+  D    K+ D+G D V+
Sbjct: 323 VDKDMKGVAEEDALRKLLTSDEEEDDEKKSDESDKEDADGE-KKKKDKGKDEVS 375


>AE014297-3396|AAF56194.2| 2072|Drosophila melanogaster CG10192-PA
           protein.
          Length = 2072

 Score = 31.1 bits (67), Expect = 6.1
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 120 NPNKRFSGNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTDR--P 177
           +PN++ S  A  S +  +  S   ++         K+QP    Q   + PG+ ST    P
Sbjct: 707 SPNRKSSIQAATSTTTSSGASSSTASTPTHASSKLKQQPVNNLQHGKQIPGKVSTPALPP 766

Query: 178 KSGKVTKAKTSLPPNKLNTYSISERNNLVKKTTSAAKKVDE 218
            + +++ A T L      T +I+   N  KK   A K+  E
Sbjct: 767 TASRISAAVTLL----AGTANITTTTNSSKKQRQAQKRARE 803


>AE014297-456|AAF54125.1|  577|Drosophila melanogaster CG10281-PA
           protein.
          Length = 577

 Score = 31.1 bits (67), Expect = 6.1
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 517 IDSDIIGSELDHQINDLLTSIREAEEKVQMDTNPKQTVDANINKEGDEGADTVT 570
           +D D+ G   +  +  LLTS  E +++ + D + K+  D    K+ D+G D V+
Sbjct: 323 VDKDMKGVAEEDALRKLLTSDEEEDDEKKSDESDKEDADGE-KKKKDKGKDEVS 375


>AE013599-141|AAF57284.1|  419|Drosophila melanogaster CG7845-PA
           protein.
          Length = 419

 Score = 31.1 bits (67), Expect = 6.1
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 682 PVEKNDDVVVAPETTADKPVSELPNENKTV-----DTENNDESKANEQTGDMAEEAKDVI 736
           P E    V   PE  AD  +    +ENK+V     D E  D        GD   E+++ +
Sbjct: 331 PFENEARVTEEPEEVADLQMDRNVSENKSVNATSVDNEYEDMFDQMPTVGDSDNESEEEM 390

Query: 737 SNLKSEVPATPTRSS 751
           SN+K        RSS
Sbjct: 391 SNIKLSKADLKRRSS 405


>AY113652-1|AAM29657.1|  918|Drosophila melanogaster SD14970p
           protein.
          Length = 918

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 417 YFVQILGKPVLPKRKIMQAFLDKFNPRSVKRHKRIRNLLFVGFVTEEQVDK-IISEDGHV 475
           + ++I   P   KR+ +  F     P SV+   ++    +VGF TE+ + K ++     +
Sbjct: 250 FTIKIHNVPYNTKRQEVLKFFKPLKPYSVRLPSKVHGFCYVGFKTEKDMAKGMLKNKSFI 309

Query: 476 MGK 478
            GK
Sbjct: 310 KGK 312


>AY051943-1|AAK93367.1|  581|Drosophila melanogaster LD41978p
           protein.
          Length = 581

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 306 DEALLEEVKQAKEELNVKNPDNKLIQSDDPEAFLEKNLEKLIHSKLVEMFG 356
           DE  L+++    E+ N+KN + ++  +D PE F++  +E  +H+ + E+ G
Sbjct: 102 DEQSLKKLILVFEKRNLKNQEMRIKFADSPEKFMDSEVE--LHTVIQELKG 150


>AY008258-1|AAG16637.1| 2035|Drosophila melanogaster ecdysone receptor
            co-activatorTaiman protein.
          Length = 2035

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 71   SPRYFERASFQNANNVDSDYTRYYDESVGSG--DFIPLNSRKRSYQPDWETNPNKRFSGN 128
            SP+  ++ S Q  NNV      Y  + VG G     P  S      P  + +P +  SG 
Sbjct: 1634 SPQQQQQLSQQQQNNVQQQQLAYQQQQVGDGGRSNTPFGSNSGMQSPGMQNSPQQWGSGG 1693

Query: 129  ARG 131
              G
Sbjct: 1694 GGG 1696


>AE014297-841|AAF54309.1|  581|Drosophila melanogaster CG11964-PA
           protein.
          Length = 581

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 306 DEALLEEVKQAKEELNVKNPDNKLIQSDDPEAFLEKNLEKLIHSKLVEMFG 356
           DE  L+++    E+ N+KN + ++  +D PE F++  +E  +H+ + E+ G
Sbjct: 102 DEQSLKKLILVFEKRNLKNQEMRIKFADSPEKFMDSEVE--LHTVIQELKG 150


>AE014296-1695|AAF50237.1|  918|Drosophila melanogaster CG3335-PA
           protein.
          Length = 918

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 417 YFVQILGKPVLPKRKIMQAFLDKFNPRSVKRHKRIRNLLFVGFVTEEQVDK-IISEDGHV 475
           + ++I   P   KR+ +  F     P SV+   ++    +VGF TE+ + K ++     +
Sbjct: 250 FTIKIHNVPYNTKRQEVLKFFKPLKPYSVRLPSKVHGFCYVGFKTEKDMAKGMLKNKSFI 309

Query: 476 MGK 478
            GK
Sbjct: 310 KGK 312


>AE014134-1613|AAF52754.2| 2047|Drosophila melanogaster CG13109-PA
            protein.
          Length = 2047

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 71   SPRYFERASFQNANNVDSDYTRYYDESVGSG--DFIPLNSRKRSYQPDWETNPNKRFSGN 128
            SP+  ++ S Q  NNV      Y  + VG G     P  S      P  + +P +  SG 
Sbjct: 1634 SPQQQQQLSQQQQNNVQQQQLAYQQQQVGDGGRSNTPFGSNSGMQSPGMQNSPQQWGSGG 1693

Query: 129  ARG 131
              G
Sbjct: 1694 GGG 1696


>AE013599-1792|AAF58320.2| 8805|Drosophila melanogaster CG18076-PH,
            isoform H protein.
          Length = 8805

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 687  DDVVVAPETTADKPVSELPNENKTVDTENNDESKANEQTGDMAEEAKDVISNLKSEVPAT 746
            ++     ET  ++PV   P E K ++   ND+ K  E+  D   E K         +P  
Sbjct: 3327 ENTATVKETPLNEPVPSSPAETKEIEQTTNDDQKKPEEIVD--TEKKTTEQKPVETIPTE 3384

Query: 747  PTRSS 751
            P  +S
Sbjct: 3385 PISTS 3389


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.310    0.128    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,108,403
Number of Sequences: 52641
Number of extensions: 1243303
Number of successful extensions: 4944
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 4924
Number of HSP's gapped (non-prelim): 40
length of query: 777
length of database: 24,830,863
effective HSP length: 91
effective length of query: 686
effective length of database: 20,040,532
effective search space: 13747804952
effective search space used: 13747804952
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 66 (30.7 bits)