Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000102-TA|BGIBMGA000102-PA|undefined
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 34 0.065
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 32 0.26
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 31 0.80
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 31 0.80
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 30 1.1
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 30 1.1
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 30 1.1
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 30 1.1
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 29 1.9
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 29 1.9
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 29 2.5
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 29 2.5
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 29 3.2
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 29 3.2
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 29 3.2
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 29 3.2
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 28 4.3
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 28 5.7
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 28 5.7
SPCC338.04 |cid2||caffeine induced death protein Cid2|Schizosacc... 28 5.7
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 28 5.7
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 27 7.5
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 27 7.5
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 27 7.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 7.5
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 27 7.5
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 9.9
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 27 9.9
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 27 9.9
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 34.3 bits (75), Expect = 0.065
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 120 NPNKRFSG-NARGSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTDRPK 178
+P++ +G N R FN +S + G S +P+A P+ S + G SS RP
Sbjct: 184 SPSRLGNGPNVRSPKVGFNAKSDDSPVVKSPG---SNDKPSASPRISVRSLGNSSVVRPP 240
Query: 179 SGKVTKAKTSLPPNKLNTYSISERNNLVKKTTSAAK-KVDESL-ILRP 224
T+ T+ P +++N + S ++ K +TS +K KV+ S I+RP
Sbjct: 241 ----TRTSTTRPLSRVNVTNAS--GSISKNSTSPSKVKVNASTKIVRP 282
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 32.3 bits (70), Expect = 0.26
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 119 TNPNKRFS-GNARGSDSQFNFRSGRRSANRFQGQG-SSKRQPAAEPQFSNKGPGRSSTDR 176
T P +F+ G++ G + F + S N +S+ +P+A + G G ++
Sbjct: 606 TKPTLQFNFGSSFGKPTSNIFNDKKTSENGLASSTVASESKPSAPESKPSSGFGNTAGSS 665
Query: 177 PKSGKVTKAKTSLPPNKLNTYSISERNNLVKKTTSAAKKVDESLILRPN 225
P S +TK +PP N++S +++ + +AK +PN
Sbjct: 666 PFSFNLTKESKEVPPT--NSFSFAKKGKDEANDSLSAKASTPFSFAKPN 712
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 30.7 bits (66), Expect = 0.80
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 114 QPDWETNPNKRFSGNARGSDSQFNFRSGRRS-ANRFQGQGSSKRQPAAEPQFSNKGPG 170
QP W N GN S++ +N R G R +G G S PA SN+G G
Sbjct: 923 QPPWSGN------GNFPRSNASYNSRGGHEGYGGRSRGGGYSNGPPAGNHYSSNRGKG 974
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 30.7 bits (66), Expect = 0.80
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 698 DKPVSELPNENKTVDTENNDESKANEQ----TGDMAEEAKDVISNLKSEVPA 745
D + L ++N T+ ENN+E+ E+ +G+ A + +D S+ +S VP+
Sbjct: 73 DNEANLLSDQNITISNENNNENDTTEEAETSSGNEAADDEDSSSDAQSSVPS 124
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 698 DKPVSELPNENKTVDTENNDESKANEQTGDMAEEAKDVI 736
D + EL NE T + + DES+A E DM KD +
Sbjct: 3930 DDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSV 3968
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 681 VPVEKNDDVVVAPETTADKPVSELPNENKTVDTENNDESKANEQTGDMAEEAKDVISNLK 740
+PV+ DVVV P+TT ++ ++ P + + EN++ +A + ++ K +I +
Sbjct: 709 LPVQTGADVVV-PDTTDEEVITSEPVKLEQPINENSNVEEAEKDYQPSEKDDKSLIGGIL 767
Query: 741 SEVPAT 746
S V T
Sbjct: 768 STVEMT 773
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 30.3 bits (65), Expect = 1.1
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 244 LKELKTKFSE-VEAYRDTIQSPLAQRTVKQILRDRIKELMMNKYIGGINDGLTVYR---- 298
L E+ + E +E+Y + + S + RT+K+ + +K K + + + L R
Sbjct: 525 LTEMNQRLKEQIESYENEVNSEITSRTLKEF--ETLK-TQYEKNLCNLREQLKTARMKLA 581
Query: 299 KRYPEGTDEALLEEVKQAKEELNVKNPDNKLIQSDDPEAFLEKNLEKLI 347
+YP+G + + E + K L N +N + P F K + KL+
Sbjct: 582 DKYPQGDNTS--ENIDWLKHSLRDSNTENSI---PSPLTFACKEIRKLV 625
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/51 (25%), Positives = 30/51 (58%)
Query: 524 SELDHQINDLLTSIREAEEKVQMDTNPKQTVDANINKEGDEGADTVTINDN 574
S+L +++++ T ++E + ++ D N +T++ I+ DE + +IN N
Sbjct: 802 SDLKNKLSEESTRLQELQSQLNQDKNQIETLNERISAAADELSSMESINKN 852
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 29.5 bits (63), Expect = 1.9
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 131 GSDSQFNFRSGRRSANRFQGQGSSKRQPAAEP----QFSNKGPGRSSTDRP--KSGKVTK 184
GS+SQ+ SG+ S N F + P Q + +G + + P T+
Sbjct: 48 GSESQYISSSGQNSTNPFLADTRIENSPLGSESKANQLNKQGTNVNHIEIPLRDFNDPTQ 107
Query: 185 AKTSLPPNKLNTYS--ISERNNLVKKTTSAAKKVD 217
++ LPP K NT++ I + NL KK K D
Sbjct: 108 PESFLPPPK-NTFTSRIKKIKNLFKKEKKQVKPED 141
>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 682 PVEKNDDVVVAPETTADKPVSELPNENKTVDTENNDESKANEQTGDMAEEAKDVISNLKS 741
P +KN+ VVV E AD + E K ++E + + +T + +EAK V S +
Sbjct: 44 PYQKNEKVVVLDEEDADAFLHPEEAEAKK-ESEKPSDGEKKGKTEKLEKEAKSVYSKACN 102
Query: 742 EVPATPTRSSA 752
V A +SA
Sbjct: 103 FVNAHKVPASA 113
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 681 VPVEKNDDVVVAPETTADKPVSELPNENKTVDTENNDESKANE-QTGDMAEEAKDVISNL 739
V +EK ++ +++ E T+ P + E TE + +S +NE + D+A+E + +I
Sbjct: 95 VEIEKENESIISKE-TSQAPETSTGAEEHQETTEESKQSVSNEVSSPDVAKEQEKLIQRA 153
Query: 740 K 740
K
Sbjct: 154 K 154
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 29.1 bits (62), Expect = 2.5
Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 240 MGHLLKELKTKFSEVEAYRDTIQSPLAQRTVKQILRDRIKELMMNKYIGGINDGLTVYRK 299
+ +L +E++T E E R + S +A + +I +R K L Y+ + +
Sbjct: 786 ISNLEEEIRTIDRETEVLRIELPSSIAHHNLDEIYAEREKLLEKRGYLRKQIERTKLEET 845
Query: 300 RYPEGTDEALL--EEVKQAKEELNVKNPDNKLIQSDDPEAFLEKNLEKLIHSKLVEMFGK 357
+ + D+A+L E K +LN + + + ++ D ++ + +L+K KL+E+ K
Sbjct: 846 SFKKKIDDAVLANNEQKLKLTKLNFQVNELEQLEKDINKSSEDCDLQK---KKLLEVSSK 902
Query: 358 R 358
+
Sbjct: 903 Q 903
>SPBC577.05c |rec27|mug41|meiotic recombination protein
Rec27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 28.7 bits (61), Expect = 3.2
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 311 EEVKQAKEELNVKNPDNKLIQSDDPEAFLEKNLEKLIHSKLVEMFGKRIVKLLNANKAFE 370
E ++ EELN+KN + ++ + D E+ + N+E + K + F K + ++ K FE
Sbjct: 25 EIIEHVLEELNLKNIERRVKKYDQIESEYKTNIE---NEK--KAFIKDVSQVQQKIKEFE 79
Query: 371 ASKAFLIQLANTKAVNL 387
KA I+ N + +++
Sbjct: 80 IQKANQIKQLNEEKLSI 96
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 28.7 bits (61), Expect = 3.2
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 682 PVEKNDDVVVAPETTADKPVSELPNENKTVDTENNDESKANEQTGDMAEEAK----DVIS 737
P ++ V + E +KP L N+N T N DES NE ++ K D
Sbjct: 46 PFRTSNVVFKSKEPKDNKP---LDNKNDPKKTHNEDESHTNESLPSTDKKKKKDNDDFKQ 102
Query: 738 NLKSEVPATPTRSSA 752
NLKS T + SA
Sbjct: 103 NLKSSSNKTEEKYSA 117
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 28.7 bits (61), Expect = 3.2
Identities = 22/93 (23%), Positives = 37/93 (39%)
Query: 290 INDGLTVYRKRYPEGTDEALLEEVKQAKEELNVKNPDNKLIQSDDPEAFLEKNLEKLIHS 349
+ DG T+ K+ DE L + + L VK +L Q D A L+ +L
Sbjct: 290 LKDGSTLSAKKIVSSVDEGKLPHQQIQQRYLLVKGDCQQLFQEDGFFAALDASLIHFSPF 349
Query: 350 KLVEMFGKRIVKLLNANKAFEASKAFLIQLANT 382
+ E FG + L + + + + + I T
Sbjct: 350 SISENFGNSVQAKLYGSGSGDCPEGYCIWYLKT 382
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 682 PVEKNDDVVVAPETTADKPVSELPNENKTVDTENNDESKANEQTGDMAEEAK 733
P KN+ + D + + N+++ +D+ NN+E+ NE + A E K
Sbjct: 30 PARKNESTNDVIDNHTDTEIDDHDNDHENLDSNNNNEN--NEAFNEKAAEKK 79
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 696 TADKPVSELPNENKTVDTENNDESKANEQTGDMAEEAKDVISNLKSEVPATPTRSSA 752
T +KP+S LP E T++ E +N + + + +E+ PT +++
Sbjct: 708 TTEKPLSSLPEEVSRQPTDDKGEQVSNADVDSGLSKTERLTIQQTNEIKHVPTNTTS 764
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 681 VPVEKNDDVVVAPETTADKPVSELPNENKTVDTENNDESKANEQTGDMAEEAKDVISNLK 740
V +K D++V + +P+S+ P + VD E + EQ+GD++++ N
Sbjct: 1094 VSKKKKKDLIVELKEKKFQPISK-PKKGHLVDLEVENALAEEEQSGDVSQDEDSDAYNYL 1152
Query: 741 SEVP 744
+P
Sbjct: 1153 LSMP 1156
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 27.9 bits (59), Expect = 5.7
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 222 LRPNCPMSNQLQGRLELVMGHLLKELKTKFSEVEAYRDTIQSPLAQRTVKQILRDRIKEL 281
+R P + QG+ +L +G L E+K +F E D +++ + L ++ +
Sbjct: 816 IRVFLPNDLKSQGQ-KLTVGKALSEVKRRFPEGITLLDPVENMNIKEPTFIKLMKKVN-I 873
Query: 282 MMNKYIGGINDGLTVYRKRYPEGTDE-ALLEEVKQAKEELN 321
+ ++ + + ++Y E + ALLEEVK K++L+
Sbjct: 874 LESRLLSNPLHNFSELEEKYAEYLRKLALLEEVKDLKKKLS 914
>SPCC338.04 |cid2||caffeine induced death protein
Cid2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 167
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 245 KELKTKFSEVEAYRDTIQSPLAQRTVKQILRDRIKELMMNKYIGGINDGLTVYR 298
KE++ + S E + +QS L+ V+QI+RD+ E++ N G D Y+
Sbjct: 116 KEVQVQLSPPEEVQIVLQSELS---VEQIIRDQTWEVLTNACPGMFKDWRDTYK 166
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 27.9 bits (59), Expect = 5.7
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 69 YDSPRYFERASFQNANNVDS---DYTRYYDESVGSGDFIPLNSRKRSYQPDWETNPNKRF 125
YD PRY ER S + +VD+ + R+YD S S D L R+ S + + R
Sbjct: 191 YDYPRYSERKSLNSKRHVDNYNENRRRHYD-SYSSYD--ELERRRSSNESYSRRSELPRR 247
Query: 126 SGNARGSDSQFNFRSGRRSAN 146
N ++++ R +N
Sbjct: 248 DYNRHDERERYSYHRRRERSN 268
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 27.5 bits (58), Expect = 7.5
Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 10/126 (7%)
Query: 243 LLKELKTKFSEVEAYRDTIQSPLAQRTVKQILRDRIKELMMNKYIGGIN---------DG 293
L+++ + + Y D P+ +R K+ ++DR + +Y + DG
Sbjct: 91 LVRQYEAPKELLNEYADESYDPMQERQSKKQIQDRESDYQKQRYDRQLTPTRVDAFQPDG 150
Query: 294 LTVYRKRYPEGTDEALLE-EVKQAKEELNVKNPDNKLIQSDDPEAFLEKNLEKLIHSKLV 352
+ Y E + LE E ++ ELN + + L + ++ E+ +K E +++ +
Sbjct: 151 TQSNGRSYAEVMRQVELEKEERRVHMELNQRRREGTLKEVEEEESISDKKRELELNNTEI 210
Query: 353 EMFGKR 358
KR
Sbjct: 211 SQKPKR 216
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 128 NARGSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQFSNKGPGRSS 173
N + S F+ SA F+ Q S + +EP+ ++KG G S+
Sbjct: 211 NDKKSSENFDELLANTSAKAFENQKGSAGETKSEPKEADKGSGDST 256
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 27.5 bits (58), Expect = 7.5
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 139 RSGRRSANRFQGQ-GSSKRQPAAEPQFSNK--GPGRSSTDRPK-SGKV----TKAKTSLP 190
+S + +R Q S K QP PQ S K G G S+ PK SG + ++A + P
Sbjct: 26 KSNHEALSRLQSPLNSPKLQPIGSPQASRKTSGSGSSAPLYPKWSGALSLASSRAASPAP 85
Query: 191 PNKLNTYSISERNNLVKKTTSAA 213
+ T+ S+ L + +A
Sbjct: 86 SDSFPTFGYSQLGGLENSSKGSA 108
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 702 SELPNENKTVD---TENNDESKANEQTGDMAEEAKDVISNLKSEVPATPTRSS 751
+ L N+NK D TEN +AN + + ++ A + +S K ++ A +S
Sbjct: 105 TNLENQNKRFDALTTENQSLRRANSELQEQSKIASEQLSIAKDQIEALQNENS 157
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 118 ETNPNKRFSGNARGSDSQFNFRSGRRSANRFQGQGSSKRQPA 159
++N N R GN + +SQF+ R R+ Q Q SS +P+
Sbjct: 38 KSNSNSRSRGNKKLKESQFSSRDNFRTT---QTQASSSSEPS 76
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 698 DKPVSELPNENKTVDTENNDESKANEQ---TGDMAEEAKDVISNLKSEVPATPTRSSA 752
D P S++ E T D NN K + + ++ E K+ N K+E PA PT +S+
Sbjct: 403 DVPKSQVGGETDTTDVINNSTPKEETEESPSTELPETGKEQPPN-KAE-PAVPTEASS 458
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 684 EKNDDVVVAPETTADKPVSELPNENKTVDTENNDESKANEQTGDMAEE 731
E +DD + +T + V NENKT E + NEQ EE
Sbjct: 729 ESDDDKIFEQQTKIEDDVK---NENKTEPVEEQKSEEKNEQPNLKKEE 773
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 516 TIDSDIIGSELDHQINDLLTSIREAEEKVQMDTNPKQTVDANINKE 561
T D+D + +LD+Q+ DL++ I ++E+ T + A+ N +
Sbjct: 5 TTDADALDDQLDYQV-DLVSEISVSDEESAQPTTITENFTASQNND 49
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.128 0.350
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,371
Number of Sequences: 5004
Number of extensions: 117416
Number of successful extensions: 410
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 43
length of query: 777
length of database: 2,362,478
effective HSP length: 78
effective length of query: 699
effective length of database: 1,972,166
effective search space: 1378544034
effective search space used: 1378544034
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 57 (27.1 bits)
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