Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000102-TA|BGIBMGA000102-PA|undefined
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 37 0.053
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 34 0.38
01_06_1379 + 36801473-36801889 33 0.87
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 32 2.0
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582... 32 2.0
04_04_0792 - 28091597-28091675,28091853-28091908,28092151-280922... 32 2.0
03_05_0633 + 26276454-26277368 31 3.5
01_05_0194 - 19107143-19108055,19110864-19111132 31 3.5
11_03_0050 - 9323946-9324143,9324161-9324163 31 4.6
03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779 31 4.6
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990... 30 6.1
02_02_0246 - 8243584-8243696,8243848-8244415,8244500-8244685,824... 30 6.1
01_07_0044 - 40701286-40701408,40701642-40701758,40702406-407024... 30 6.1
07_03_1528 + 27474973-27475289,27476890-27477073,27477081-274772... 30 8.1
>01_06_1123 +
34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 37.1 bits (82), Expect = 0.053
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 84 NNVDSDYTRYYDESVGSGDFIPLN----SRKRSYQPDWETNPNKRFSGNARGSDSQFNFR 139
N SD YY+ S S + N S SY + + N ++ N+ S++ N
Sbjct: 760 NGGRSDNNPYYNSSTWSSNSTYSNNAAWSSNSSYNSNSAWSSNSSYNSNSAWSNNSNNSW 819
Query: 140 SGRRSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTDRPKSGKVTKAKTSLPPNKLN 195
SG S N G GSS +P +S+ G S +R +GK + P+ L+
Sbjct: 820 SGSYSDNGGTGSGSSASRPNQTAGYSSYG---ESANRGYTGKSLEGSAVKDPDPLD 872
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 34.3 bits (75), Expect = 0.38
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 108 SRKRSYQPDWETNPNKRFSGNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQFSNK 167
SR RSY + + ++ S A S +G SA G G KR P A+P ++
Sbjct: 628 SRSRSYTRNRRASRSRSRSPGA--SRRHERSATGSGSALPDSGHGERKRTPEADPSRNHT 685
Query: 168 GPGRSSTDR-PKSGKVTKA---KTSLPPNKLNTYSISERNNLVKKTTSAAKKVD 217
DR P+ GKV K ++ P +K YS N ++ S +V+
Sbjct: 686 NHSDPKDDRHPEDGKVGKVDLDRSPTPQDKSGPYS-PAYNGKTSRSVSPGNQVE 738
>01_06_1379 + 36801473-36801889
Length = 138
Score = 33.1 bits (72), Expect = 0.87
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 88 SDYTRYYDESVGSGDFIPLNSRKRSYQPDWETNPNKRFSGNARGSDSQFNFRSGRRSANR 147
S+ TR E+ G G ++ + S+ E + R S ARG+ RS R +A R
Sbjct: 6 SECTRITPETTGGGK-PTISLQASSWSSRMEPSDPDRRSRLARGACGSRLLRSARWTATR 64
Query: 148 FQGQGSSKRQPAAEPQFSNKGPGRSSTDRPKSGKVTKAKTS 188
F + + A P + KGP + R S T A+ S
Sbjct: 65 FYRRARASVARAFRPASTKKGPASCAASR--SPDCTPARNS 103
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 31.9 bits (69), Expect = 2.0
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 303 EGTDEALLEEVKQAKEELNVKNPDNKLIQSDDP-EAFLEKNL--EKLIHSKL 351
E +DE +L++ + A++ L + PD K++Q D P E L + + EKLI +
Sbjct: 178 EKSDEKILQQDEPAEKILQQEKPDEKILQQDKPDEGPLNEEMPDEKLIEKPI 229
>04_04_1475 +
33856351-33856582,33857614-33857781,33858156-33858261,
33858391-33858442,33858525-33858642,33858736-33858766,
33858962-33858985,33859075-33859199,33860087-33860168,
33860319-33860441,33860539-33860592,33860669-33860738,
33861276-33861309,33861824-33862170
Length = 521
Score = 31.9 bits (69), Expect = 2.0
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 139 RSGRRSANRFQGQGSSKRQPAAEPQFSNKG-PGRSSTDRPKSGKV 182
R GR+ +NR +G+G+ K P +P +G P ++ + K+G +
Sbjct: 463 RRGRKPSNRGRGRGAKKATPEPKPSARGRGRPKKTESPAQKTGSL 507
>04_04_0792 -
28091597-28091675,28091853-28091908,28092151-28092211,
28092290-28092363,28092865-28092945,28093127-28093201,
28093276-28093395,28093486-28093566,28093644-28093712,
28094057-28094128,28094220-28094362,28094452-28094566,
28094651-28094774,28095124-28095476,28096035-28096374,
28096914-28097124,28097209-28097482,28097570-28097788,
28097868-28098004,28098117-28098375
Length = 980
Score = 31.9 bits (69), Expect = 2.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 417 YFVQILGKPVLPKRKIMQAFLDKFNPRSVKRHKRIRNLLFVG 458
+ V++L +P +Q DK N S K+H R+RNL VG
Sbjct: 809 FLVEVLNVRSIPSATEVQQIADKIND-SEKKHVRVRNLKLVG 849
>03_05_0633 + 26276454-26277368
Length = 304
Score = 31.1 bits (67), Expect = 3.5
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 127 GNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTDRPKSGKVTKAK 186
G R S + RS RR+A R G G R+ AA PQ + P + G
Sbjct: 185 GGGRSSGYGGSARSHRRAARR--GDGGGVRRDAAVPQRPSPSPSPLRSGADGQGSPPTGG 242
Query: 187 TSLP 190
TSLP
Sbjct: 243 TSLP 246
>01_05_0194 - 19107143-19108055,19110864-19111132
Length = 393
Score = 31.1 bits (67), Expect = 3.5
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 682 PVEKNDDVVVAPE--TTADKPVSE---LPNENKTVDTENNDESKANEQTGDMAEEAKDVI 736
PV N + P+ + A+ PV P +NK VD ++ +S +T + + ++
Sbjct: 262 PVSANKIAICQPDFPSKAEFPVGSSFVTPRKNKLVDVTDHKDSAELVKTRSIQNKKGEMP 321
Query: 737 SNLKSEVPATPTRSS 751
S++ + P PT+S+
Sbjct: 322 SSVTGKAPTMPTKSA 336
>11_03_0050 - 9323946-9324143,9324161-9324163
Length = 66
Score = 30.7 bits (66), Expect = 4.6
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 84 NNVDSDYTRYYDESVGSGDFIPLNSRKRSYQPDWETNPNKRFSGNARGSDSQFNFRSG 141
+ VD+D+ R+Y++S+ DF N S + D++ N N SG+ G N R G
Sbjct: 13 DEVDNDFERWYNKSLLKMDF---NENPLSEEEDFDDNDN--MSGDNTGDKDDNNERRG 65
>03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779
Length = 704
Score = 30.7 bits (66), Expect = 4.6
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 126 SGNARGSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTDRPKSGKVTK- 184
SG+ R + +F S RR+ +R Q G+ R P G R D
Sbjct: 44 SGSCRAESTASSFESFRRAGSRPQPVGAVARMPTRRSASERAGSQRDLRDEDARFVYVND 103
Query: 185 -AKTSLPPNKLNTYSIS 200
A+T+ PP K S++
Sbjct: 104 AARTNAPPAKFPDNSVT 120
>03_02_0619 +
9904405-9904586,9905315-9906764,9907320-9907509,
9909578-9910164
Length = 802
Score = 30.3 bits (65), Expect = 6.1
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 302 PEGTDEALLEEVKQAKEELNVKNPDNKLIQSDDPEAFLEKNLEKLIHSKLVEMFGKRIVK 361
PEG E + + + + +EEL V +PD+K++ DPE +LE + + GK+I K
Sbjct: 733 PEGPVEVVWQTMVRRQEELAVGHPDDKVL---DPE-WLEVGED-------INTVGKQIAK 781
Query: 362 LLNANKAFEASKAFL 376
+L+ + E FL
Sbjct: 782 MLHGDLLDEIILEFL 796
>02_02_0246 -
8243584-8243696,8243848-8244415,8244500-8244685,
8244772-8244804,8244901-8244999,8245091-8245330,
8246130-8246447,8246589-8246646,8246788-8246846,
8246888-8246960,8247004-8247219,8247326-8247495
Length = 710
Score = 30.3 bits (65), Expect = 6.1
Identities = 42/197 (21%), Positives = 71/197 (36%), Gaps = 11/197 (5%)
Query: 194 LNTYSISERNNLVKKTTSAAKKVDESLILRPNCPMSNQLQGRL-ELVMGHLLKELKTKFS 252
L Y I NLV TS +K +S+ NQL + + V+ H + KT+
Sbjct: 276 LTAYLIGNMTNLVVHGTSRTRKFRDSIQAASEFAARNQLPENIKQQVLSHFCLQFKTEGL 335
Query: 253 EVEAYRDTIQSPLAQRTVKQILRDRIKELMMNKYIGG--INDGLTVYRKRYPEGTDEALL 310
+ D + + + I++ + + G I + + + Y ++ +L
Sbjct: 336 NQQVMLDCLPKGIRSSIAYSLFFPIIRQAYLFNGVSGNFIAELVMEVQAEYFPPKEDIIL 395
Query: 311 EEVKQAKEELNVKNPDNKLIQSDDPEAFLEKNLEKLIHSKLVEMFGKRIVKLLNANKAFE 370
+ +A + V N + E EK E EMFG+ + L N + F
Sbjct: 396 QNEGEADVYIVVSGAVNIITTIHGNEQVYEKIAEG-------EMFGE-VGSLCNIPQPFT 447
Query: 371 ASKAFLIQLANTKAVNL 387
A L QL L
Sbjct: 448 CRTAELSQLLRISKTRL 464
>01_07_0044 -
40701286-40701408,40701642-40701758,40702406-40702498,
40702598-40702717,40702932-40703048,40703202-40703297,
40703395-40703544,40703916-40704070,40704156-40704196,
40704275-40704357,40704827-40705264
Length = 510
Score = 30.3 bits (65), Expect = 6.1
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 189 LPPNKLNTYSISERNNLVKKTTSAAKKVDESLILRPNCPMSNQLQGRLELVMGHLLKELK 248
+P N+Y+ L+ K K V S++L+ N M + + R+ G L KEL
Sbjct: 375 IPVRVKNSYNPKAPGTLITKQREMDKVVLTSIVLKSNVTMLDIVSTRMLGQFGFLAKELD 434
Query: 249 TKFSEVEAYRDTIQSPLAQRTVKQILRD-RIKELMMNK 285
E+E + + L QR + ++ + R L++ K
Sbjct: 435 HVVEELE--KIAVVHLLQQRAIISLIGNVRRSSLILEK 470
>07_03_1528 +
27474973-27475289,27476890-27477073,27477081-27477261,
27477270-27478206,27478384-27479035,27479352-27479798
Length = 905
Score = 29.9 bits (64), Expect = 8.1
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 209 TTSAAKKVDESLILRPNCPMSNQL---QGRLELVMGHLLKELKTKFSEV-EAYRDTIQSP 264
T++ ++ ++L+ + + +L +G + + + H + + + E D +P
Sbjct: 569 TSATVNSEEQKVLLKSSLKVLQRLTSIEGEIGITLRHKISKHPFLLRNLAEILGDNSITP 628
Query: 265 LAQRTVKQILRDRIKELMMNKYIGGINDGLTVYRKRY-----PEGTD-EALLEEVK-QAK 317
++ V +ILR+ + + IG I +T K + P T+ + LL +V QA
Sbjct: 629 ELRKLVAEILRNLAIDRDARQEIGQIQVLITRLMKAFLNCNGPSSTNADCLLPKVAGQAL 688
Query: 318 EELNVKNPDNKLIQSDDPEAFLEK 341
L +N DN L+ S +PE F+ K
Sbjct: 689 AMLASENVDNCLVMSKEPE-FINK 711
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.128 0.350
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,474,006
Number of Sequences: 37544
Number of extensions: 657190
Number of successful extensions: 1784
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1777
Number of HSP's gapped (non-prelim): 20
length of query: 777
length of database: 14,793,348
effective HSP length: 88
effective length of query: 689
effective length of database: 11,489,476
effective search space: 7916248964
effective search space used: 7916248964
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 64 (29.9 bits)
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