GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000102-TA|BGIBMGA000102-PA|undefined
         (777 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    34   0.016
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    28   0.82 
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    25   5.7  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    25   5.7  

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 33.9 bits (74), Expect = 0.016
 Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 95   DESVGSGDFIPLNSRKRSYQPDWETNPNKRFSGNAR---GSDSQFNFRSGRRS-ANRFQG 150
            DES G     P   RKR    D E +   +    +R   GS S+   RSG  S A    G
Sbjct: 1034 DESGGESG-APATKRKRRIASDEEDSDGSQRRSRSRSRSGSGSRSRSRSGSGSRAGSRAG 1092

Query: 151  QGSSKRQPAAEPQFSNKGPGRSSTDRPKSG 180
             GS  R  +     S  G  + S  R +SG
Sbjct: 1093 SGSRSRSRSRSRSRSRSGSAKGSRSRSRSG 1122


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 304 GTDEALLEEVKQAKEELNVKNPDNKLIQSDDPEAFLEKNLEKLIHSKLV 352
           G  +AL +EV+  + EL+ +N     +Q  DPE   ++   K + +KLV
Sbjct: 480 GRRQALQQEVRGLRSELDRRNAHRWELQYRDPEPGFDRRSVKGMVAKLV 528



 Score = 25.0 bits (52), Expect = 7.6
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 308 ALLEEVKQAKEELNVKNPDNKLIQSDDPEAFLEKNLEKLIHSKLVEMFGKRIVKLLNANK 367
           AL +++KQ KE++N ++ + K  +    +  L++N E  +  K  E     I K+ N NK
Sbjct: 868 ALKQQIKQHKEKMNSQSKELK-AKYHQRDKLLKQNDELKLEIKKKE---NEITKVRNENK 923


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 21/77 (27%), Positives = 31/77 (40%)

Query: 140 SGRRSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTDRPKSGKVTKAKTSLPPNKLNTYSI 199
           S  + + + Q Q  S   P +    S++ P  SST    S   T   TS  P    + S 
Sbjct: 18  SSSKPSPQQQQQLHSADVPHSSTSQSSRRPQHSSTSASSSSVPTLPTTSGEPRAAGSSSN 77

Query: 200 SERNNLVKKTTSAAKKV 216
           S RN+   +    A K+
Sbjct: 78  SRRNSKQLQRDELAAKM 94


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 21/77 (27%), Positives = 31/77 (40%)

Query: 140 SGRRSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTDRPKSGKVTKAKTSLPPNKLNTYSI 199
           S  + + + Q Q  S   P +    S++ P  SST    S   T   TS  P    + S 
Sbjct: 18  SSSKPSPQQQQQLHSADVPHSSTSQSSRRPQHSSTSASSSSVPTLPTTSGEPRAAGSSSN 77

Query: 200 SERNNLVKKTTSAAKKV 216
           S RN+   +    A K+
Sbjct: 78  SRRNSKQLQRDELAAKM 94


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.310    0.128    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,929
Number of Sequences: 2123
Number of extensions: 22719
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 5
length of query: 777
length of database: 516,269
effective HSP length: 69
effective length of query: 708
effective length of database: 369,782
effective search space: 261805656
effective search space used: 261805656
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 52 (25.0 bits)