GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000102-TA|BGIBMGA000102-PA|undefined
         (777 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                29   0.14 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    27   0.77 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.77 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             27   0.77 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   5.4  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   7.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 29.1 bits (62), Expect = 0.14
 Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 131 GSDSQFNFRSGRRSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTDRPKSGKVTKAKTSLP 190
           GS       +G R  +    Q   +     +  +    PG +   RP     T A TS P
Sbjct: 177 GSTGTTTTSTGTRLLHGILSQHPQQHGLGVQNGYGRHLPGHAQMGRPSYTTATMATTSTP 236

Query: 191 -PNKLNTYSISERNNLVKKTTSAAKKVDESLILRPNCPMSNQLQGRLELVMGHLLKEL 247
               L         + V+ +TS+    D +L+L+     ++ LQ  L     HL   L
Sbjct: 237 GSGSLPASPADSGVSDVESSTSSGGNEDANLLLKARLNPNSSLQPSLASHHSHLSSAL 294


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 0.77
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 110 KRSYQPDWETNPNKRF-SGNARGSDSQFNFRSGRRSA 145
           +R YQP +   P++RF SG    + S  + RS R S+
Sbjct: 414 RRRYQPAFRCKPSQRFASGRYYSAYSLHHVRSSRESS 450


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 26.6 bits (56), Expect = 0.77
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 125 FSGNARGSDSQFNFRSG-RRSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTDRPKSGKVT 183
           +S     S SQ +  S   R++NR +  G   R+P+     +   P   S  + K  K  
Sbjct: 17  YSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKKK 76

Query: 184 KAKTSLPPN 192
           K+KT L  N
Sbjct: 77  KSKTILAVN 85


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 26.6 bits (56), Expect = 0.77
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 125 FSGNARGSDSQFNFRSG-RRSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTDRPKSGKVT 183
           +S     S SQ +  S   R++NR +  G   R+P+     +   P   S  + K  K  
Sbjct: 17  YSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKKK 76

Query: 184 KAKTSLPPN 192
           K+KT L  N
Sbjct: 77  KSKTILAVN 85


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 138  FRSGR----RSANRFQGQGSSKRQPAAEPQFSNKGPGRSSTDRPKSGK 181
            F+ GR    + AN  QGQ  ++ +P ++     K        RPK GK
Sbjct: 992  FKRGRYTPPQPANAQQGQAQAQAKPQSQEANKPKPATGGKGTRPKRGK 1039


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 688 DVVVAPETTADKPVSELPNENKTVDTENNDESKA 721
           D V  PETT  +  ++ P   + V   NN E +A
Sbjct: 18  DNVTMPETTPRRKKNKKPLPTECVFCRNNGEEEA 51


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.128    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,650
Number of Sequences: 429
Number of extensions: 7330
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 777
length of database: 140,377
effective HSP length: 63
effective length of query: 714
effective length of database: 113,350
effective search space: 80931900
effective search space used: 80931900
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 47 (23.0 bits)