Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000101-TA|BGIBMGA000101-PA|IPR002048|Calcium-binding
EF-hand
(1694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 39 0.040
08_01_0883 + 8672020-8672193,8672343-8672458,8672604-8672756,867... 34 0.86
01_07_0078 - 40923115-40924016,40924341-40924416,40924686-40924718 34 1.1
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150... 33 1.5
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491... 33 2.0
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 33 2.6
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702... 33 2.6
12_01_0582 - 4752576-4752786,4752955-4753037,4753324-4753530,475... 32 3.5
11_06_0610 - 25449085-25453284 32 3.5
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 32 3.5
12_01_1069 - 11060045-11060262,11060404-11060545,11060624-110607... 32 4.6
04_03_0007 + 9287927-9288619 32 4.6
01_05_0548 + 23149271-23149568,23149766-23149845,23150137-231502... 32 4.6
09_04_0086 + 14445665-14446683,14448669-14448915 31 6.1
04_04_1537 - 34235360-34235486,34236107-34236234,34236344-342364... 31 6.1
09_02_0549 + 10485415-10486107 31 8.0
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 31 8.0
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148... 31 8.0
01_03_0214 + 13863123-13863593,13863671-13864132,13864308-138650... 31 8.0
01_01_0022 - 170045-170095,170406-170554,170764-170875,171398-17... 31 8.0
>01_06_1801 - 39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 38.7 bits (86), Expect = 0.040
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 314 STRSSKESFQFQRMQRPSSEMQEGPRWSKGRDEHRN-DFGDAYKKNRDLSSVPGLRSIDH 372
ST + + Q+ P+ E G +W KG E R+ DF + K+R+L S R +D
Sbjct: 1462 STDLIDSNMKQQKRFVPTEEQDRGTKWRKGESEGRDGDFTEHTDKDRNLDS----RLVDK 1517
Query: 373 QNSRDHEANRPNSQTQLCARPPAEPEWDIDRMN-DP 407
DH+ + S+ Q+ +RP E D+ + DP
Sbjct: 1518 FRPMDHD--KSASEEQILSRPEKSKEKADDKYDRDP 1551
>08_01_0883 + 8672020-8672193,8672343-8672458,8672604-8672756,
8672868-8673195,8673250-8673480,8673567-8673707,
8673805-8674002,8674467-8674754
Length = 542
Score = 34.3 bits (75), Expect = 0.86
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Query: 1390 LTRDTKSAEAKHDITALSNSTVSKLDVSKSKSNTTVIKVGNKVINIKESTDRREKQGVDD 1449
LT+D + DI A V SKSN + G + +RR K+
Sbjct: 123 LTKDVALLAEETDILATQLKASQLYSVDSSKSNEELQSKGQVFVRSTRLLERRSKRRY-- 180
Query: 1450 PKPIVSINEVAKTKSNTTKNEVGNKAVKINVPTNRTEKTLPQSKQTTKRSNIDEDNLFAK 1509
P SI +V+ + N+ K E K ++ P + L + T + +E +LF+K
Sbjct: 181 -APRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRDRETTEFLTAKEERHLFSK 239
>01_07_0078 - 40923115-40924016,40924341-40924416,40924686-40924718
Length = 336
Score = 33.9 bits (74), Expect = 1.1
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 100 PEREKSMSGPHVMQPPGPTQPGYTNVDNKNVRFPPFVRTNNPYEQYMENNPASSQARPQH 159
P MS P M PGP+ GY + + P + ++PYE Y P S R QH
Sbjct: 241 PPAPAPMSMPMPMARPGPSSQGYIDEEYS----PSYYNRSSPYEPYY--YPQPSPYRYQH 294
Query: 160 IQSQETIQPMYSGGYPSSHKGNASQPAWG 188
Q Q + Y G + + A+G
Sbjct: 295 YQ-QSSADDYYYGAPQQRSAFSPPRDAYG 322
>01_05_0564 +
23312419-23312987,23314652-23314751,23314832-23315055,
23315212-23316041,23316161-23316275,23316786-23316905,
23317410-23317450,23317546-23317595,23317684-23317719,
23317836-23317856
Length = 701
Score = 33.5 bits (73), Expect = 1.5
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 100 PEREKSMSGPHVMQPPGPT-QPGYTNVDNKN---VRFPPFVRTNNPYEQYMENNPASSQA 155
P +S S H P PT Q +T+V ++ V+ +R + NP+++Q
Sbjct: 446 PSNNQSTSSLH-QNPRAPTHQQSHTSVVHQKSGQVQTQSAMRIPTQQLNHRTGNPSTTQH 504
Query: 156 RPQHIQSQETIQPMYSGGYPSSHKGNASQPA 186
P ++S E+++ +G YPSS+K NAS A
Sbjct: 505 LP--VRSTESVE---NGLYPSSNKSNASSGA 530
>01_06_0747 -
31645136-31646521,31647870-31648142,31649080-31649148,
31649486-31649614
Length = 618
Score = 33.1 bits (72), Expect = 2.0
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 141 PYEQYMENNPASSQARPQHIQSQET-----IQPMYSGGYPSSHKGNASQPAWGPV---QK 192
P QY+ P+++Q P H SQ++ QP Y +SQPA PV Q
Sbjct: 285 PEVQYLPVRPSATQDVPVHASSQQSQAANQTQPQSFPPYQQQWPQQSSQPAPAPVAQPQP 344
Query: 193 TSWQQETKRVFDPKLGDNVNLPP 215
T Q V P+L + PP
Sbjct: 345 TFSQPFPPPVQQPQLSNTQQFPP 367
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 32.7 bits (71), Expect = 2.6
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 1367 AVPFKDKIDDRPKVTAKTRKTETLTRDTKSAEAKHD 1402
A+PF+ DD T + R+T+++TR T+ +A HD
Sbjct: 574 AIPFQTARDDSQDTTQRARETDSVTRSTRDQDA-HD 608
>02_05_0235 -
27068516-27069032,27069697-27069788,27070056-27070289,
27071569-27071676,27071796-27071855,27072368-27072443,
27072550-27072710,27076919-27076981,27077061-27077148,
27077568-27078308,27078406-27079033,27079314-27079368,
27082073-27083527
Length = 1425
Score = 32.7 bits (71), Expect = 2.6
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 311 PNSSTRSSKESFQFQRMQRPSSEMQEGPRWSKGRDEHRNDFGDAY 355
PN+ST +S S R++ P+S G RW KG+ R FG Y
Sbjct: 914 PNNSTPTSPISHSPGRVENPTSP---GSRWKKGKLVGRGTFGHVY 955
>12_01_0582 - 4752576-4752786,4752955-4753037,4753324-4753530,
4755128-4755207,4756853-4756998,4757088-4757719
Length = 452
Score = 32.3 bits (70), Expect = 3.5
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 1070 AKFMRLVKRHKTEMDDSSVVNMEFSSDEDDIYDINVKIVLNVSATREAPFVDLDYESRAK 1129
A+F RL+ H+ ++ ++ E + +D++ +N I+ ++SA +E +L + R K
Sbjct: 83 AEFRRLMADHRALAEERLALHRELQAGKDEVRHLNT-IIADISAKKETYIGEL-VDKRRK 140
Query: 1130 IDSAKRRQE 1138
+++ R E
Sbjct: 141 LEAELRANE 149
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 32.3 bits (70), Expect = 3.5
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 95 SDIPRPEREKSMSGPHVMQPPGPTQPGYTNVDNKNVRFPPFVRTNNPYEQYMENNPASSQ 154
S P PE+ S H PP P + + PP ++ P E ++ + P +
Sbjct: 813 SSPPTPEKSPSPPSGHEGTPPSPVKSSSPPPEAHVSSPPPEKSSSPPPEAHVSSPPPPEK 872
Query: 155 A-RPQHIQSQETIQPMYS----GGYPSSHKGNASQP 185
+ P +S T+ P S G P SH +S P
Sbjct: 873 SPPPPETKSPPTLTPEISPPPEGKSPPSHTPESSSP 908
Score = 31.9 bits (69), Expect = 4.6
Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 3/121 (2%)
Query: 98 PRPEREKSMSGPHVMQPPGPTQPGYTNVDNKNVRFPPFVRTNNPY-EQYMENNPASSQAR 156
P PE E S P + P+ P + + K+ PP T+ P E+Y + P SS
Sbjct: 718 PTPESEASSPPPPAPEGHTPSPPKSSPPEEKSPPIPPTSHTSPPTPEEYTPSPPKSSPPE 777
Query: 157 PQHIQSQETIQPMYSGGYPSSHKGNASQPAWGPVQKTSWQQETKRVFDPKLGDNVNLPPP 216
+ + S +P+S + P P +++S K P G P P
Sbjct: 778 EKSPPPHSPEKSPPSEAHPTSPPPSEKSPP-TPAEESSPPTPEKSP-SPPSGHEGTPPSP 835
Query: 217 V 217
V
Sbjct: 836 V 836
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 32.3 bits (70), Expect = 3.5
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 292 PPPGSFRSNVDPQTNDYREPNS-STRSSKESFQFQRMQRPSSEMQEGPRWSKGRDEHRND 350
P P R + P R + S R ++ + R + S E ++ R+ + RDE ++
Sbjct: 315 PSPARKRESRSPSPRSKRLRRAQSEREGADATEGDRRKTTSREERDSGRYRE-RDEGKDV 373
Query: 351 FGDAYKKNRDLSSVPGLRSIDHQNSRDHEANRPNSQT 387
D + D R +DH + RDH +R + ++
Sbjct: 374 SRDRKTEREDSRGSFKDRKLDHDDDRDHSRDRRSDRS 410
>12_01_1069 - 11060045-11060262,11060404-11060545,11060624-11060776,
11060942-11061013,11062774-11063082,11063323-11063378,
11066436-11066533,11066616-11066700,11066800-11067001,
11067471-11067542,11069555-11069624,11071829-11072038,
11072337-11072609,11073912-11074183,11075354-11075557
Length = 811
Score = 31.9 bits (69), Expect = 4.6
Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 11/176 (6%)
Query: 1171 SQDYRLYRSNRRESEKKLKENQRND---VRDNIRRVAVINRNKNAVNQNRTTF-EELYRK 1226
S+ Y Y ++ R+++ KL + D + +I++V+ R K Q R E+L K
Sbjct: 309 SKRYVNYATSIRDNQTKLNSETKEDDCNTQSDIKKVSRSARRKKLKRQLRQKAKEQLKEK 368
Query: 1227 PYVQVRKAVEDQPRATPNDVSELPTQMSKT-----VDGEPDDPMRNLSFDRLPRKAGVSL 1281
+ Q + V D P + DV P+ V E D+ + S D +P V
Sbjct: 369 EHCQEQPTVADCPSSNNRDVLPSPSSNQNNSSLPFVRHEADEEESDTSDDIVP--VVVRP 426
Query: 1282 FLKTHNCCGLKKMNSKGIDYCTRARDANTLNRICAQKHFTIDNSNVTVTPMYRHMK 1337
G KK+N DY N + + + N +V V ++++
Sbjct: 427 GHIRFESAGKKKINQSYPDYRVNLPCTNAIILVQVDMSSPLVNLSVLVVSYLQNLR 482
>04_03_0007 + 9287927-9288619
Length = 230
Score = 31.9 bits (69), Expect = 4.6
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 143 EQYMENNPASSQARPQHIQSQETIQPMYSGGYP---SSHKGNASQPAWGPVQKTSWQQET 199
+Q ENN + R + Q Q + + G P SS P W P+ K+ T
Sbjct: 136 KQCQENNSSLQLQRGGTLLRQHPQQVLSAPGRPTVVSSSNAPGIAPIWRPIDKSPLGNPT 195
Query: 200 KRVFDPKLGDNVNLPPP 216
+ P D + PPP
Sbjct: 196 GKKILPVTADKIVAPPP 212
>01_05_0548 + 23149271-23149568,23149766-23149845,23150137-23150223,
23150421-23150729,23150774-23150899,23151977-23152360,
23152603-23152608
Length = 429
Score = 31.9 bits (69), Expect = 4.6
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 1603 KAMLSEI-IVIDECGLADMKPKETSKKTNEEQIGVK--VKTDSKLGTEKSDFPTLPNKSD 1659
K + SEI D + D+ ++ K E G + ++TD + E+S + K D
Sbjct: 308 KLLASEIWFHKDNLAMVDLTKTDSEKSDEERDTGTRTYIETDGRANGEESAGDS-DRKGD 366
Query: 1660 GAINEKSDDELSDSEIR 1676
+I E+SD SD + R
Sbjct: 367 ASIKEESDATASDRDAR 383
>09_04_0086 + 14445665-14446683,14448669-14448915
Length = 421
Score = 31.5 bits (68), Expect = 6.1
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 990 PKSSVIFEGIKK----SNANIKGLNTHLWK-LRGVHHSKQKSETKLHLDVDIKSIEKLIE 1044
P S+IFE KK + NI T ++K LR + Q + H D + + I
Sbjct: 262 PLGSMIFEEYKKETEGAEINISQAITFVFKQLRKICTGIQAQRSMKHSDYNFCNKIVQIP 321
Query: 1045 MNYAISYADSNNRRHTLTMKHDYSEAKFMRLVKRHKTEMDDSSVVNMEFSSDED 1098
++Y +NN T K D S + F R+ R + S ++ + +ED
Sbjct: 322 LSYGEDKPRNNNNIRTKKRKMDLSRSLFRRIASRDDKSL---SCIDKQKGKNED 372
>04_04_1537 - 34235360-34235486,34236107-34236234,34236344-34236483,
34236967-34237023,34237358-34237475,34237585-34237734,
34237857-34237941,34238040-34238104,34238351-34238500,
34238835-34238910,34239071-34239150
Length = 391
Score = 31.5 bits (68), Expect = 6.1
Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 7/139 (5%)
Query: 1340 PYPKTVFDGKQRRTMIGRTENRKVINTAVPFKDKIDDRPKVTAKTRKTETLTRDTKSAEA 1399
PY D Q + R+ N VI ++ + I+D + + + ++ K +
Sbjct: 234 PYLDYACDDHQNMITVPRSMNG-VIESSTEYVQTIEDELSMKQDESQLDEHKKEEKDCSS 292
Query: 1400 KHDITALSNSTVSKLDVSKSKS-NTTVIKVGNKVINIKESTDRREKQGVDDPKPIVSINE 1458
K + NS+ SK SK+K + + N+ + RE PK E
Sbjct: 293 KGETAQKHNSSHSKKGKSKTKECSCGSARKHKPSCNLATTVASRE-----PPKTTAPSRE 347
Query: 1459 VAKTKSNTTKNEVGNKAVK 1477
KTK K + G K K
Sbjct: 348 PPKTKGGQGKGQKGKKQKK 366
>09_02_0549 + 10485415-10486107
Length = 230
Score = 31.1 bits (67), Expect = 8.0
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 143 EQYMENNPASSQARPQHIQSQETIQPMYSGGYP---SSHKGNASQPAWGPVQKTSWQQET 199
+Q ENN + R + Q Q + + G P SS P W P+ K+ T
Sbjct: 136 KQCQENNSSLQLQRGSTLLRQHPRQVLSAPGRPTVVSSSNAPRIAPIWRPIDKSPLGNPT 195
Query: 200 KRVFDPKLGDNVNLPPP 216
+ P D PPP
Sbjct: 196 GKKILPVTADKTVAPPP 212
>03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 31.1 bits (67), Expect = 8.0
Identities = 30/141 (21%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 1371 KDKIDDRPKVTA-KTRKTETLTRDTKSAEAKHDIT---ALSNSTVSKLDVSKSKS-NTTV 1425
+D + R K TA + +KT+ + + ++ H + + S V ++ + SK N+
Sbjct: 29 QDIMSRREKKTASEAKKTKEGLEENSNGKSNHLESGRGSKSRKDVREMPLEGSKKDNSDK 88
Query: 1426 IKVGNKVINIKEST-DRREKQGVDDPKPIVSINEVAKTKSNTTKNEVGNKAVKINVPTNR 1484
G+K ++ + + R K + D + VS + K + +++ N VK+ VP+
Sbjct: 89 PGEGSKKDEMRHTPREERRKDNMRDMQREVSKKDNLKDRPKDI-SKIDNLKVKVKVPSKD 147
Query: 1485 TEKTLPQSKQTTKRSNIDEDN 1505
++ P+ +RS+ +D+
Sbjct: 148 DQRDAPKKSSKKERSSTRDDS 168
>02_05_1326 - 35712102-35712473,35712608-35712720,35712944-35714857,
35714942-35715135,35715237-35716786,35716946-35717049,
35717258-35717399,35717692-35717910
Length = 1535
Score = 31.1 bits (67), Expect = 8.0
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 1376 DRPKVTAKTRKTETLTRDTKSAEAKHDITALSNSTVSKLDVSKSKSNTTVIKVGNKV 1432
D P+V + + AE HD T S+S+ S+L+++++ + I VGNKV
Sbjct: 1320 DGPEVAVRLAGMPLFVDNGTEAEKSHDNTRCSSSSHSELNITEAVQELS-IDVGNKV 1375
>01_03_0214 +
13863123-13863593,13863671-13864132,13864308-13865038,
13865121-13865291,13865371-13865629,13866069-13866158
Length = 727
Score = 31.1 bits (67), Expect = 8.0
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 82 LLAGQSRRLGQLRSDIPRPEREKSMS------GPHVMQPPGPTQPGYTNVDNKNVRFPPF 135
L+ GQ R LG++ P P+R K+ + V++ P + G V++ NV
Sbjct: 430 LVKGQKRELGKVGELAPEPKRGKAATSMPVSKAGKVVRAPAQFELGMPLVED-NVLAVMG 488
Query: 136 VRTNNPYEQYMENNPASSQARPQHIQSQETIQPMYS 171
+ ++QYME + A + R I QP S
Sbjct: 489 IACRELHKQYMELSNAKRKMRESSIVGHHDHQPFLS 524
>01_01_0022 - 170045-170095,170406-170554,170764-170875,171398-171469,
171578-171671,171770-171921,172004-172072
Length = 232
Score = 31.1 bits (67), Expect = 8.0
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 1159 YTRRDRFDRPGPSQDYRLYRSNRRESEKKLKENQRN 1194
Y + R RPGPSQD R+ R K++ E QRN
Sbjct: 45 YKEQIRKTRPGPSQDAIKARAIRLLKHKRMYEEQRN 80
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.131 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,298,818
Number of Sequences: 37544
Number of extensions: 1956854
Number of successful extensions: 3652
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3629
Number of HSP's gapped (non-prelim): 43
length of query: 1694
length of database: 14,793,348
effective HSP length: 92
effective length of query: 1602
effective length of database: 11,339,300
effective search space: 18165558600
effective search space used: 18165558600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 67 (31.1 bits)
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