Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000101-TA|BGIBMGA000101-PA|IPR002048|Calcium-binding
EF-hand
(1694 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31880.1 68417.m04531 expressed protein 40 0.019
At1g09040.1 68414.m01008 expressed protein 36 0.23
At2g08986.1 68415.m01009 hypothetical protein 34 0.72
At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /... 34 0.72
At1g55050.1 68414.m06288 expressed protein ; expression supporte... 34 0.95
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 33 1.3
At3g60110.1 68416.m06712 DNA-binding bromodomain-containing prot... 33 1.7
At3g01560.1 68416.m00086 proline-rich family protein contains pr... 33 1.7
At5g27310.1 68418.m03261 expressed protein 33 2.2
At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related conta... 33 2.2
At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family p... 32 3.8
At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family p... 32 3.8
At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1) c... 32 3.8
At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1) c... 32 3.8
At3g14220.1 68416.m01797 GDSL-motif lipase/hydrolase family prot... 32 3.8
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 32 3.8
At5g40450.1 68418.m04905 expressed protein 31 5.1
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 31 5.1
At3g15590.1 68416.m01975 DNA-binding protein, putative similar t... 31 5.1
At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to vil... 31 5.1
At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family pr... 31 5.1
At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family pr... 31 5.1
At5g62170.1 68418.m07804 expressed protein various predicted pro... 31 6.7
At5g35220.1 68418.m04176 peptidase M50 family protein / sterol-r... 31 6.7
At4g37540.1 68417.m05312 LOB domain protein 39 / lateral organ b... 31 6.7
At2g38650.1 68415.m04747 glycosyl transferase family 8 protein c... 31 6.7
At2g26470.1 68415.m03176 expressed protein contains PF02586: Unc... 31 6.7
At5g62550.1 68418.m07850 expressed protein 31 8.8
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 31 8.8
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 31 8.8
At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit (... 31 8.8
At1g12080.2 68414.m01397 expressed protein 31 8.8
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 39.5 bits (88), Expect = 0.019
Identities = 24/114 (21%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 1389 TLTRDTKSAEAKHDITALSNSTVSKLDVSKSKSNTTVIKVGNKVINIKESTDRREKQGVD 1448
++T T S K+ + S S + + S + ++ + + K + ++++ +
Sbjct: 404 SVTAATSSENEKNKSVQILPSKTSGDETANVSSPSMAEELPEQSVPKKTANQKKKESSTE 463
Query: 1449 DPKPIVSI-NEVAKTKSNTTKNEVGNKAVKINVPTNRTEKTLPQSKQTTKRSNI 1501
+ KP SI E + NT++ +V K+ K +++T+ T+P SK++T + +
Sbjct: 464 EVKPSASIATEEVSEEPNTSEPQVTKKSGKKVASSSKTKPTVPPSKKSTSETKV 517
>At1g09040.1 68414.m01008 expressed protein
Length = 911
Score = 35.9 bits (79), Expect = 0.23
Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 10/195 (5%)
Query: 1213 VNQNRTTFEELYRK----PYVQVRKAVEDQPRATPNDVSELPTQMSKTVDGEPDDPMRNL 1268
V Q +T EE+ + P V+ K DQ + T S L ++ +T + EP N
Sbjct: 640 VQQQTSTCEEMNQDKETVPLVEHMKLKSDQSKKTGTGPSSLLVEIQETTEIEPSGLNSNT 699
Query: 1269 SFDR--LPRKAGVSLFLKTHNCCGLKKMNSKGIDYCTRARDANTLNRICAQKHFTIDNSN 1326
D+ P K S K + C + K + K + A L I + + N +
Sbjct: 700 GVDKNCSPEKISTSHEQKPNGLCSVSKSDKKRASNDLEQKQALELPSISGLNNRSSSN-D 758
Query: 1327 VTVTPMYRHMKRPPYPKTVFDGKQRRTMIGRTENRKVINTAVPFKDKIDDRPKVTAK--T 1384
+ T ++ + DG +R++ R + + A+ R K T K
Sbjct: 759 LGTTQELGSSEQQHGQQNNTDGPRRQSTRKRPLTTRALE-AMESDFLTTKRMKSTTKPEP 817
Query: 1385 RKTETLTRDTKSAEA 1399
RK E+ T+ +SA+A
Sbjct: 818 RKRESSTKKKRSAKA 832
>At2g08986.1 68415.m01009 hypothetical protein
Length = 1218
Score = 34.3 bits (75), Expect = 0.72
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 1371 KDKIDDRPKVTAKTRKTETLTRDTKSAEAKHDITALSNSTVSKLDVSKSKSNTTVIKVGN 1430
K K+D +PK T + K+ E K S S+ S L+ +K K++T
Sbjct: 519 KKKVDTKPKTHMDFGDTMKALKSKKNVELKPQPDLKSLSSDSLLEDTKPKTHTD-FDYTM 577
Query: 1431 KVINIKESTDRREKQGVDDPKPIVSINEVAKTKSNTTKNEVGNKAVKINVPTNRTEKTL- 1489
K + K+ R ++D KP ++ K+ +K +V + KI+ T K L
Sbjct: 578 KALRSKKKVGVRIVSLLEDTKPKTHMDLGYTMKALRSKKKVEDTKPKIHTDFGYTMKALR 637
Query: 1490 PQSKQTTK-RSNID 1502
+ K TK +++ID
Sbjct: 638 SKMKVDTKPKTHID 651
>At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
SEC14-like protein 2 (Alpha-tocopherol associated
protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos
taurus}; similar to GI:807956 from [Saccharomyces
cerevisiae]; contains Pfam PF00650 : CRAL/TRIO domain;
contains Pfam PF03765 : CRAL/TRIO, N-terminus
Length = 573
Score = 34.3 bits (75), Expect = 0.72
Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 1369 PFKDKIDDRPKVTAKTRKTETLTRDTKSAEAKHDITALSNSTVSKLDVSKSKSNTTVIKV 1428
P DK P A+ + D K+ K ++T + ++ + S S + V
Sbjct: 22 PITDKEVTIPTPVAEKEEVAAPVSDEKAVPEK-EVTPEKEAPAAEAEKSVSVKEEETVVV 80
Query: 1429 GNKVINIKESTDRREKQGVDDPKPIV--SINEVAKTKSNTTKNEVGNKAVKINVPTNRTE 1486
KV+ + + + +K+ +++ K +V ++N+ T T E + K T E
Sbjct: 81 AEKVVVL--TAEEVQKKALEEFKELVREALNKREFTAPVTPVKEEKTEEKKTEEETKEEE 138
Query: 1487 KTLPQSKQTTKRSNIDED 1504
KT + ++TT ++E+
Sbjct: 139 KTEEKKEETTTEVKVEEE 156
>At1g55050.1 68414.m06288 expressed protein ; expression supported
by MPSS
Length = 914
Score = 33.9 bits (74), Expect = 0.95
Identities = 49/188 (26%), Positives = 66/188 (35%), Gaps = 19/188 (10%)
Query: 239 ETHNVQADNARNPGWRPDPF---QETVAKRQSGAGNVQRFENSLGGRSDFYEGIQHPPPG 295
E N++ P P+ F ETV + S A Q+ N L RS +G H P
Sbjct: 632 ENENIEIQE--RPETEPNGFCSISETVHEPSSSAQ--QQEPNGL--RSSKEQGALHDEPI 685
Query: 296 SFRSNVDPQTNDYREPNSSTRSSKESFQFQRMQRPSSEMQEGPRWSKGRDEHRNDFGDAY 355
S +EPN SSKE F + E R + D G A
Sbjct: 686 SLAQQ--------QEPNG-LYSSKEQGAFHEHSSTEQQQDESNRLCLDKICSSKDLGTAQ 736
Query: 356 KKNRDLSSVPGLRSIDHQNSRDHEANRPN-SQTQLCARPPAEPEWDIDRMNDPMMNPKRD 414
K+ + + P S + SRDH S Q + DI R P
Sbjct: 737 KEEQPIQLPPKSASDKNSPSRDHGTTEERASLEQQEEEHKQQANTDIPRRQSTRKRPLTT 796
Query: 415 KAVEAIVS 422
+A+EA+ S
Sbjct: 797 RALEALES 804
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 33.5 bits (73), Expect = 1.3
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 1353 TMIGRTENRKVINTAVPFKDKIDDRPKVTAKTRKTETLTRDTKSAEAKHDITAL--SNST 1410
+++G +K + + K I+ + T K ++ + T+ + D T N
Sbjct: 32 SLVGAESKKKAVQSDEEDKYSINTEEEKVVITGKKKSNKKVTQKHDDDDDFTEAVPENGF 91
Query: 1411 VSKLDVSKSKSNTTVIKVGNKVINIKESTDRREKQGVDDPKPIVSINEVAKTKSNTTK 1468
V K SK K+ + +++ KE TD E G D +P++S K SN K
Sbjct: 92 VGKKKKSKGKNRGGSVSFA--LLSGKEETDDNESNGDKDDEPVISFTG-KKNASNKGK 146
>At3g60110.1 68416.m06712 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 438
Score = 33.1 bits (72), Expect = 1.7
Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 14/152 (9%)
Query: 1358 TENRKVINTAVPFKDKIDDRPKVTAKTRKTETLTRDTKSAEAKHDITALSNSTVSKLDVS 1417
+ + + + VP K K K + + + + KS E + + +T S
Sbjct: 214 SRQKSSVLSLVPCKKKSSALKKTSPSSSSRQK--DEKKSQEVSEEKIVTTTATTSARSSR 271
Query: 1418 KSKSNTTVI----KVGNKVINIKESTDRREKQGVDDPKPIVSINEVAKTKSNTTKNEVGN 1473
++ V+ K G NIK+ TD + + DD ++ + S T K V +
Sbjct: 272 RTSKEIAVVAKDTKTGRAKNNIKKQTDTKTESSDDD-------DDEKEENSKTEKKTVAD 324
Query: 1474 KAVKINVPTNRTEKTLPQ-SKQTTKRSNIDED 1504
K + R +K PQ K+TT ++ D
Sbjct: 325 KKKSVADFLKRIKKNSPQKGKETTSKNQKKND 356
Score = 31.1 bits (67), Expect = 6.7
Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 17/147 (11%)
Query: 1353 TMIGRTEN--RKVINTAVPFKDKIDDRPKVTAKTRKTETLTRDTKSAEAKHDITALSNST 1410
T GR +N +K +T D DD + +KT K K+ K A
Sbjct: 284 TKTGRAKNNIKKQTDTKTESSDDDDDEKEENSKTEK--------KTVADKKKSVADFLKR 335
Query: 1411 VSKLDVSKSKSNTTVIKVGNKVINIKESTDRREKQGVDDPKPIVSINEVAKTKSNTTKNE 1470
+ K K K T+ + N N+K+ D ++K + K E +K K ++
Sbjct: 336 IKKNSPQKGKETTSKNQKKNDG-NVKKENDHQKKSDGNVKK------ENSKVKPRELRSS 388
Query: 1471 VGNKAVKINVPTNRTEKTLPQSKQTTK 1497
G K V++ +++ Q+K+T +
Sbjct: 389 TGKKKVEVENNNSKSSSKRKQTKETAE 415
>At3g01560.1 68416.m00086 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 511
Score = 33.1 bits (72), Expect = 1.7
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Query: 92 QLRSDIPRPEREKSMSGPHVMQP-PGPTQPGYTNVDNKNVRFPPFVRTNNPYEQYMENNP 150
Q++S P P R++ +G Q P QP + D R + E Y +
Sbjct: 344 QMQSYPPNPPRQQPPAGSTPSQQFYNPPQPQPSMYDGAGGRSNSGFPSGYLSEPYTYSGS 403
Query: 151 ASSQARPQHIQSQETIQPMYSGGYPSSH 178
S A+P HI S T P S P H
Sbjct: 404 PMSSAKPPHISSNGTGYPQLSNSRPLPH 431
>At5g27310.1 68418.m03261 expressed protein
Length = 370
Score = 32.7 bits (71), Expect = 2.2
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 5/141 (3%)
Query: 1336 MKRPPYPKTVFDGKQRRTMIGRTENRKVINTAVPFKDKIDDRPKVTAKTRKTETLTRDTK 1395
+K+ P T+ T++ E+ + T + K + K +LTR+T+
Sbjct: 126 LKKEDEPGTIACQVTAFTLLKNKEDERFQTTVEAVESKTTIKLSELNKKEDQRSLTRETE 185
Query: 1396 SAEAKHDITALSNSTVSKLDVSKSKSNTTVIKVGNKVINIKESTDRREKQGVDDPKPIVS 1455
+A++ AL K + K K K +N+K T + V KP
Sbjct: 186 MIKARNSFLALKQKEDHKSETCDEKYFKKETKTNLKPLNMK--TRCVSLEDVTTKKPHED 243
Query: 1456 INEVAKTKSNTTKNEVGNKAV 1476
+ + KTK T+ E+ NK V
Sbjct: 244 GSLIKKTK---TEKELKNKKV 261
>At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related contains
weak similarity to Pre-mRNA cleavage complex II protein
Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo sapiens]
Length = 808
Score = 32.7 bits (71), Expect = 2.2
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 276 ENSLGGRSDFYEGIQHPPPGSFRSNVDPQTNDYREPNSSTRSSKESFQFQRMQRPSSEMQ 335
+NSLGG +DF + ++ P S S D T R N S ++F + M R +S
Sbjct: 239 QNSLGGYNDFEDQLE--SPSSLSSTPDGFT---RRSNDGANPSNQAFNY-GMGRATSRDD 292
Query: 336 EGPRWSKGRDEHRNDFGDAYKKNRDLSSVPGLRSIDHQ--NSRDHEANRPNSQTQLCARP 393
E W R E+ G+ +++ R L G+ + H N + N +S+ +
Sbjct: 293 EHMEWR--RKENLGQ-GNDHERPRALIDAYGVDTSKHVTINKPIRDMNGMHSKMVTPWQN 349
Query: 394 PAEPEWDIDRMNDPMMNPKRDKAVEAIVSTI 424
E E+D + M+ P ++ R +A E + S++
Sbjct: 350 TEEEEFDWEDMS-PTLD--RSRAGEFLRSSV 377
>At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family
protein (SRL1) contains Pfam profile PF03371: PRP38
family
Length = 385
Score = 31.9 bits (69), Expect = 3.8
Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 13/155 (8%)
Query: 289 IQHPPPGSFRSNVDPQTNDYREPNSSTRSSKESFQFQRMQRPSSEMQEGPRWSKGRDEHR 348
++ PPP + N + R P S S + QR ++ R +GRD +R
Sbjct: 216 VRRPPPTGYDRNGGDEVQQ-RSPRRSQSRDYYSDRDSDRQREREREKDRER-ERGRDRYR 273
Query: 349 N---DFGDAYKKNRDLSSVPGLRSIDHQNSRDHEANRPNSQTQLCARPPAEPEWDIDRMN 405
D+G+ + RD S R D+++ R R S+++ +R I+R
Sbjct: 274 ERERDYGNDRRSRRDYDS--RSRRNDYEDDRSRHDRRSRSRSRSRSR-----SVQIEREP 326
Query: 406 DPMM-NPKRDKAVEAIVSTILKKHQYLAECGDEER 439
P + ++K+ + S + K + ++R
Sbjct: 327 TPKRDSSNKEKSAVTVNSNLAKLKDLYGDASSQKR 361
>At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family
protein (SRL1) contains Pfam profile PF03371: PRP38
family
Length = 393
Score = 31.9 bits (69), Expect = 3.8
Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 13/155 (8%)
Query: 289 IQHPPPGSFRSNVDPQTNDYREPNSSTRSSKESFQFQRMQRPSSEMQEGPRWSKGRDEHR 348
++ PPP + N + R P S S + QR ++ R +GRD +R
Sbjct: 224 VRRPPPTGYDRNGGDEVQQ-RSPRRSQSRDYYSDRDSDRQREREREKDRER-ERGRDRYR 281
Query: 349 N---DFGDAYKKNRDLSSVPGLRSIDHQNSRDHEANRPNSQTQLCARPPAEPEWDIDRMN 405
D+G+ + RD S R D+++ R R S+++ +R I+R
Sbjct: 282 ERERDYGNDRRSRRDYDS--RSRRNDYEDDRSRHDRRSRSRSRSRSR-----SVQIEREP 334
Query: 406 DPMM-NPKRDKAVEAIVSTILKKHQYLAECGDEER 439
P + ++K+ + S + K + ++R
Sbjct: 335 TPKRDSSNKEKSAVTVNSNLAKLKDLYGDASSQKR 369
>At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1)
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH1 (SUVH1) GI:13517742
Length = 670
Score = 31.9 bits (69), Expect = 3.8
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 109 PHVMQPP-GPTQPGYTNV-----DNKNVRFPPFVRTNNPYEQYMENNPAS--SQARPQHI 160
P V PP GP PG+++ N P + P + NP Q PQH
Sbjct: 35 PFVCAPPFGPFPPGFSSFYPFSSSQANQHTPDLNQAQYPPQHQQPQNPPPVYQQQPPQHA 94
Query: 161 QSQETIQPMYSGGYPSSHKGNA 182
+ P+ S P GNA
Sbjct: 95 SEPSLVTPLRSFRSPDVSNGNA 116
>At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1)
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH1 (SUVH1) GI:13517742
Length = 670
Score = 31.9 bits (69), Expect = 3.8
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 109 PHVMQPP-GPTQPGYTNV-----DNKNVRFPPFVRTNNPYEQYMENNPAS--SQARPQHI 160
P V PP GP PG+++ N P + P + NP Q PQH
Sbjct: 35 PFVCAPPFGPFPPGFSSFYPFSSSQANQHTPDLNQAQYPPQHQQPQNPPPVYQQQPPQHA 94
Query: 161 QSQETIQPMYSGGYPSSHKGNA 182
+ P+ S P GNA
Sbjct: 95 SEPSLVTPLRSFRSPDVSNGNA 116
>At3g14220.1 68416.m01797 GDSL-motif lipase/hydrolase family protein
similar to myrosinase-associated proteins GI:1769968,
GI:1769970 from [Brassica napus]; contains InterPro Entry
IPR001087 Lipolytic enzyme, G-D-S-L family; contains 1
predicted transmembrane domain;
Length = 363
Score = 31.9 bits (69), Expect = 3.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 1069 EAKFMRLVKRHKTEMDDSSVVNMEFSSDEDDIYDINVKIVLNVSAT 1114
+ F+ RH TE D V N+ +S D+ + +N+K ++ +AT
Sbjct: 311 QKSFLFFDGRHNTEKTDEEVANLFYSGDKHVVSPMNIKDLVGKAAT 356
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 31.9 bits (69), Expect = 3.8
Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 1333 YRHMKRPPYPKTVFDGKQRRTMIGRTENRKVINTAVPFKDKIDDRPKVTAK-----TRKT 1387
+RH KR P P+ K+ RT R E R + +A+ ++ + +P V+ + R
Sbjct: 169 HRHNKRSPSPQAQSQRKRSRTDDSRNEQRASLRSAL-YETNKEAKPDVSRRLLQFAVRDA 227
Query: 1388 ETLTRDTKS---AEAKHDITALSNSTVSKLDVSKSKSNTTVIKVGNKVINIKESTDRREK 1444
++R S + K + +S ST + D ++ +V +V N + + ++
Sbjct: 228 LAISRPANSSTESSLKRLRSVVSTSTQNSSDPDPARKIRSVARVVNPMATVMKAV----A 283
Query: 1445 QGVDDPKPIVSINEVAKTKSNTTKNE 1470
+ +D K S V S++T +E
Sbjct: 284 EAAEDAKKPKSGRSVFDRISHSTGSE 309
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 31.5 bits (68), Expect = 5.1
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 1602 IKAMLSEIIVIDECGLADMKPKET---SKKTNEEQIGVKVKTDSKLGTEKSDFPTLPNKS 1658
++ + +E+I + L++ ET ++K EEQ+ K++ + G +LP+ S
Sbjct: 1615 VEEISNEVIQVSSASLSEGPEYETVVEAEKIGEEQVADKIQKSFETGEIVEAHSSLPSSS 1674
Query: 1659 D----GAINEKSDDE-LSDSE 1674
+ ++EK+DDE + D+E
Sbjct: 1675 EEKEHETVSEKTDDEKVKDAE 1695
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 31.5 bits (68), Expect = 5.1
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 117 PTQPGYTNVDNKNVRFPPFVRTNNPYEQYMENNPASSQARPQHIQSQETIQPMYSGGYPS 176
PT P Y+ P +P Y +P+ S P + + P G P+
Sbjct: 1652 PTSPAYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1709
Query: 177 SHKGNASQPAWGPVQKTSWQQETK 200
S + + P++GP + Q K
Sbjct: 1710 SPSYSPTSPSYGPTSPSYNPQSAK 1733
>At3g15590.1 68416.m01975 DNA-binding protein, putative similar to
DNA-binding protein [Triticum aestivum] GI:6958202;
contains Pfam profile: PF01535 PPR repeat
Length = 610
Score = 31.5 bits (68), Expect = 5.1
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 986 YKNSPKSSVIFEGIKKSNANIKGLNTHLWKLRGVHHSKQKSETKLHLDVDIKSIEKLIEM 1045
Y +P S F + K + G ++K G+ +SK + +L+ D+ S + +
Sbjct: 14 YNFAPSS---FGAVSKLEVSSGGDKERVFKSFGLIYSKPQGLVRLYSARDVFS--RFFGI 68
Query: 1046 NYAISYADSNNRRHTLTMKHDYSEAKFMRLVKRHKTE--MDDSSVVNMEFSSDEDDI 1100
+ S AD+ ++ + + + SE++ V E +DD S+ E SD DD+
Sbjct: 69 HKLSSIADAKDKGDEVVREEELSESEEAVPVSGDVPEGVVDDDSLFEPELGSDNDDL 125
>At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to villin
2 (VLN2) [Arabidopsis thaliana] GI:3415115
Length = 976
Score = 31.5 bits (68), Expect = 5.1
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 343 GRDEHRNDFGDAYKKNRDLSSVPGLRSIDHQNSRDHEANRPNSQTQLCARP 393
G+D +++ G A K +L +V G R++ H+ + HE+++ S + C P
Sbjct: 68 GKDTSQDEAGTAAVKTVELDAVLGGRAVQHREIQGHESDKFLSYFKPCIIP 118
>At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family protein
contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 478
Score = 31.5 bits (68), Expect = 5.1
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 1402 DITALSNSTVSKLDVSKSKSNTTVIKVGNKVINIKESTDRREKQGVDDPKPIVSINEVAK 1461
+IT S+S VSK ++ K+N K + +TD E + + + VS +
Sbjct: 226 EITGTSSSVVSKSEIEPEKTNVDDRKRKEREAT---TTDETESRSEETKQARVSTTSTKR 282
Query: 1462 TKSNTTKN-EVGNKAVKINVPTNRTEKTLPQSKQTTKRSNIDE 1503
+++ N + +IN ++ +P+ ++ K S +DE
Sbjct: 283 SRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDE 325
>At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family protein
contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 407
Score = 31.5 bits (68), Expect = 5.1
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 1402 DITALSNSTVSKLDVSKSKSNTTVIKVGNKVINIKESTDRREKQGVDDPKPIVSINEVAK 1461
+IT S+S VSK ++ K+N K + +TD E + + + VS +
Sbjct: 155 EITGTSSSVVSKSEIEPEKTNVDDRKRKEREAT---TTDETESRSEETKQARVSTTSTKR 211
Query: 1462 TKSNTTKN-EVGNKAVKINVPTNRTEKTLPQSKQTTKRSNIDE 1503
+++ N + +IN ++ +P+ ++ K S +DE
Sbjct: 212 SRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDE 254
>At5g62170.1 68418.m07804 expressed protein various predicted
proteins, Arabidopsis thaliana
Length = 703
Score = 31.1 bits (67), Expect = 6.7
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 1404 TALSNSTVSKL-DVSKSKSNTTVIKVGNKVI-NIKESTDRREKQGVDDPKPIVSINEVAK 1461
+ ++N ++++ ++ + K N + + +++ +KE+ RR + G D EV +
Sbjct: 233 SGINNVRLTRVKEIHEDKENRSPREYARQIVMQLKENVSRRRRMGTDITNKETQPREVHE 292
Query: 1462 TKSNTTKNEVGNKAVKINVPTNRTE--KTLPQSKQT 1495
+K ++K + V + TE KT P S QT
Sbjct: 293 SKKASSKTTIITHDVSSSPRLGLTEVPKTKPTSLQT 328
>At5g35220.1 68418.m04176 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 548
Score = 31.1 bits (67), Expect = 6.7
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 417 VEAIVSTILK--KHQYLAECGDEERIRVIEELKNELGQLFIDMFGDRDISYIEIMIKYKA 474
++ ++T+ K K + D R R+ + L N+ D G+ ++ ++K A
Sbjct: 25 IKTTITTLPKWQKRLCFSSTEDSHRFRIAKCLGNDENSNRDDSIGENGETHKSSVVK-TA 83
Query: 475 KFGDKDEEVMIENVLSKLSIEMRCLKRSAPEQLTPTMSEAANDA 518
F ++DEE + + S E K S P + PT S D+
Sbjct: 84 TFEEEDEETSKSSSTTSSSNEFGSDKTSMPSTIDPTYSSFQIDS 127
>At4g37540.1 68417.m05312 LOB domain protein 39 / lateral organ
boundaries domain protein 39 (LBD39) identical to
SP|Q9SZE8 LOB domain protein 39 {Arabidopsis thaliana}
Length = 240
Score = 31.1 bits (67), Expect = 6.7
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 6/129 (4%)
Query: 993 SVIFEGIKKSNANIKGLNTHLWKLRGVHHSKQKSETKLHLDVDIKSIEKLIEM-NYAISY 1051
S++FE ++ + G LW R H + ET L ++ I L+E + IS
Sbjct: 66 SLLFEACGRTVNPVNGAVGMLWT-RNWHVCQAAVETVLRGGT-LRPISDLLESPSLMISC 123
Query: 1052 ADSNNRRHTLTMKHDYSEAKFMRLVKRHKTEMDDSSVVNMEFSSDEDDIYDINVKIVLNV 1111
+S+ H ++ +F R TEM DS V SD D +N + L
Sbjct: 124 DESSEIWHQDVSRNQTHHCRFS--TSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLTA 181
Query: 1112 SATREAPFV 1120
A PF+
Sbjct: 182 PAV-PVPFL 189
>At2g38650.1 68415.m04747 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 619
Score = 31.1 bits (67), Expect = 6.7
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 1388 ETLTRDTKSAEAKHDITALSNSTVSKLDVSKSKSNTTVIKVGNKVINIKESTDRREKQGV 1447
E+ TR + + D++ + + K++ K + I VG++ +N TD +++
Sbjct: 62 ESFTRINATKHTQRDVSERVDEVLQKINPVLPKKSD--INVGSRDVNATSGTDSKKRGLP 119
Query: 1448 DDPKPIVSINEVAKTKSNTTKNEVGNKAV 1476
P + + + KTKS + V K V
Sbjct: 120 VSPTVVANPSPANKTKSEASYTGVQRKIV 148
>At2g26470.1 68415.m03176 expressed protein contains PF02586:
Uncharacterized ACR, COG2135; weak similarity to NF-M
protein (GI:205688) [Rattus norvegicus]
Length = 487
Score = 31.1 bits (67), Expect = 6.7
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 1186 KKLKENQRNDVRDNIRRVAVINRNKNAVNQNRTT-FEELYR-KPYVQVRKAVEDQPRATP 1243
KK +++ D+I+++ ++ K+ N + F+E+ + +P+V+ AV P
Sbjct: 273 KKEPTAEKDTFSDSIKKIEELDGEKDMSNVAKNLEFQEIVKAEPFVEDNSAVASLPEPVK 332
Query: 1244 NDVSELPTQMSKTV 1257
NDV E + K++
Sbjct: 333 NDVQEGTKEEGKSL 346
>At5g62550.1 68418.m07850 expressed protein
Length = 487
Score = 30.7 bits (66), Expect = 8.8
Identities = 27/129 (20%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 1371 KDKIDDRPKVTAKTRKTETLTRDTKSAEAKH-DITALSNSTVSKLDVSKSKSNTTVIKVG 1429
+D + D VT T++ + L T+ K ++ ++ S++ V +S+ G
Sbjct: 320 EDALQDS-SVTETTKEEQALETVTQGRTRKSLEVINVNQENDSEV-VQESEEGLRPSADG 377
Query: 1430 NKVINIKESTDRREKQGVDDPKPIVSINEVAKTKSNTTKNEVGNKAVKINVPTNRTEKTL 1489
+++ + + +D++ + PK N +TK + N +K V++N +K+
Sbjct: 378 VQIVTVVKPSDKKRARKETVPKN----NLPVRTKKSLATNSANSKTVQVNKDDKSQKKSE 433
Query: 1490 PQSKQTTKR 1498
+K TKR
Sbjct: 434 RITKPRTKR 442
>At5g48600.1 68418.m06011 structural maintenance of chromosomes (SMC)
family protein similar to SP|P50532 Chromosome assembly
protein XCAP-C {Xenopus laevis}; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 30.7 bits (66), Expect = 8.8
Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 11/145 (7%)
Query: 1372 DKIDDRPKVTAKTRKT-ETLTRDTKSAEAKHDITALSNSTVSKLDVSKSK---------S 1421
D++ + K+ +K K E L + +K + K T + N+ KL K+K
Sbjct: 799 DRLKELKKIISKEEKEIENLEKGSKQLKDKLQ-TNIENAGGEKLKGQKAKVEKIQTDIDK 857
Query: 1422 NTTVIKVGNKVINIKESTDRREKQGVDDPKPIVSINEVAKTKSNTTKNEVGNKAVKINVP 1481
N T I N I + ++ +G+++ E K + T ++ KA +I
Sbjct: 858 NNTEINRCNVQIETNQKLIKKLTKGIEEATREKERLEGEKENLHVTFKDITQKAFEIQET 917
Query: 1482 TNRTEKTLPQSKQTTKRSNIDEDNL 1506
+T++ + + K + D +NL
Sbjct: 918 YKKTQQLIDEHKDVLTGAKSDYENL 942
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 30.7 bits (66), Expect = 8.8
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 1612 IDECGLADMKPKETSKKTNEEQIGVKVKTDSKLGTEKSDFPTLPNKSDGAINEKSDDE 1669
+D L +KP E +++T EEQ+G + L T+ + P+ K D +N ++E
Sbjct: 1239 LDNDMLGSVKPVEWNEETAEEQVGAE---SPALVTDDTGEPSSERKDDDVVNFTEENE 1293
>At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit (IRX1)
nearly identical to gi:12836997
Length = 985
Score = 30.7 bits (66), Expect = 8.8
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 1359 ENRKV-INTAVPFKDKIDDRPKVTAKTRKTETLT-RDTKSAEAKHDITALSNSTVSKLDV 1416
E R++ + P+ + + D V KT KT+++ T + I A STVS +D
Sbjct: 46 EGRRICLRCGNPYDENVFD--DVETKTSKTQSIVPTQTNNTSQDSGIHARHISTVSTIDS 103
Query: 1417 SKSKSNTTVIKVGNKVINIKESTDRREKQGVDDPK 1451
+ I N+V + K+ D++ K+ DPK
Sbjct: 104 ELNDEYGNPIWK-NRVESWKDKKDKKSKKKKKDPK 137
>At1g12080.2 68414.m01397 expressed protein
Length = 138
Score = 30.7 bits (66), Expect = 8.8
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 1607 SEIIVIDECGLADMKPKETSKKTNEEQIGVKVKTDSKLGTEKSDFPTLPNKSDGAI-NEK 1665
+E +V++E A+ K +ET KKT E+ +V T++ + E+ ++ + EK
Sbjct: 57 NEEVVVEE---AEKKDEETEKKTEEKDEKTEVITETPVVEEEEKKAEEVTETPAVVEEEK 113
Query: 1666 SDDELSDSEIRAMLAESVVLDECGE 1690
+ + + + AE V +++ E
Sbjct: 114 KTEVVEEKQTEVAAAEEVAVEKAEE 138
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.131 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,524,192
Number of Sequences: 28952
Number of extensions: 1685734
Number of successful extensions: 3881
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 3849
Number of HSP's gapped (non-prelim): 64
length of query: 1694
length of database: 12,070,560
effective HSP length: 91
effective length of query: 1603
effective length of database: 9,435,928
effective search space: 15125792584
effective search space used: 15125792584
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 66 (30.7 bits)
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