GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000100-TA|BGIBMGA000100-PA|undefined
         (203 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           27   0.079
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.42 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    25   0.42 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.42 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.42 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   0.42 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.42 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.42 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.56 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   1.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.9  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   6.9  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   6.9  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   6.9  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   9.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   9.1  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   9.1  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 0.079
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 80  KSSSSNTKQTDSGPADRYQPTNYHNYPGTNSSNDHKIGYPSNKSGNQSLTSQGPGNYDKG 139
           K SS   +  ++ P+       +HN  G NS+N  +   P++   N S  +QG  + +  
Sbjct: 356 KRSSDEQQWRNNQPST--SNNRWHNNNGNNSNNHWRKNNPNDNRNNTSSRAQGETSRNSK 413

Query: 140 PYGSQG 145
             G+ G
Sbjct: 414 NSGNGG 419


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 80  KSSSSNTKQTDSGPADRYQPTNYHNYPGTNSSNDHKIGYPSN 121
           K ++S   Q  S PA     T+     GTN++N  K G  SN
Sbjct: 156 KPATSTASQNLSSPASSTSSTSSTEKAGTNNNNS-KSGQSSN 196


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 80  KSSSSNTKQTDSGPADRYQPTNYHNYPGTNSSNDHKIGYPSN 121
           K ++S   Q  S PA     T+     GTN++N  K G  SN
Sbjct: 156 KPATSTASQNLSSPASSTSSTSSTEKAGTNNNNS-KSGQSSN 196


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 80  KSSSSNTKQTDSGPADRYQPTNYHNYPGTNSSNDHKIGYPSN 121
           K ++S   Q  S PA     T+     GTN++N  K G  SN
Sbjct: 156 KPATSTASQNLSSPASSTSSTSSTEKAGTNNNNS-KSGQSSN 196


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 80  KSSSSNTKQTDSGPADRYQPTNYHNYPGTNSSNDHKIGYPSN 121
           K ++S   Q  S PA     T+     GTN++N  K G  SN
Sbjct: 156 KPATSTASQNLSSPASSTSSTSSTEKAGTNNNNS-KSGQSSN 196


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 80  KSSSSNTKQTDSGPADRYQPTNYHNYPGTNSSNDHKIGYPSN 121
           K ++S   Q  S PA     T+     GTN++N  K G  SN
Sbjct: 112 KPATSTASQNLSSPASSTSSTSSTEKAGTNNNNS-KSGQSSN 152


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 80  KSSSSNTKQTDSGPADRYQPTNYHNYPGTNSSNDHKIGYPSN 121
           K ++S   Q  S PA     T+     GTN++N  K G  SN
Sbjct: 156 KPATSTASQNLSSPASSTSSTSSTEKAGTNNNNS-KSGQSSN 196


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 80  KSSSSNTKQTDSGPADRYQPTNYHNYPGTNSSNDHKIGYPSN 121
           K ++S   Q  S PA     T+     GTN++N  K G  SN
Sbjct: 156 KPATSTASQNLSSPASSTSSTSSTEKAGTNNNNS-KSGQSSN 196


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 80  KSSSSNTKQTDSGPADRYQPTNYHNYPGTNSSN 112
           K ++S T Q  S PA     T+     GTN++N
Sbjct: 156 KPATSTTSQNLSSPASSTSSTSSTEKAGTNNNN 188


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 178 NQNQWGNKVRKKMCYKQC 195
           NQ +W N +R  + +  C
Sbjct: 180 NQQRWQNSIRHSLSFNDC 197


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 111 SNDHKIGYPSNKSGNQSLTSQGPG 134
           +N+ ++G P    G +   +Q PG
Sbjct: 429 TNETQVGAPIKGPGREGFYTQNPG 452


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
          oxygenase protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 62 LNGFRFGDKYIIKVEQVCKSSSSNTKQTDSGPADRYQ 98
          L GF F  KY   VE++        ++ ++    RY+
Sbjct: 38 LEGFNFWGKYQKAVEKLLTEQKELAEKEEAETLKRYK 74


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 62  LNGFRFGDKYIIKVEQVCKSSSSNTKQTDSGPADRYQ 98
           L GF F  KY   VE++        ++ ++    RY+
Sbjct: 198 LEGFNFWGKYQKAVEKLLTEQKELAEKEEAETLKRYK 234


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 62  LNGFRFGDKYIIKVEQVCKSSSSNTKQTDSGPADRYQ 98
           L GF F  KY   VE++        ++ ++    RY+
Sbjct: 198 LEGFNFWGKYQKAVEKLLTEQKELAEKEEAETLKRYK 234


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 82  SSSNTKQTDSGPADRYQPTNYHNYPGTNSS 111
           S+SN   T S   D Y  ++  N+  ++SS
Sbjct: 32  STSNYLYTPSSTIDLYNTSSVSNFNESSSS 61


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 82  SSSNTKQTDSGPADRYQPTNYHNYPGTNSS 111
           S+SN   T S   D Y  ++  N+  ++SS
Sbjct: 32  STSNYLYTPSSTIDLYNTSSVSNFNESSSS 61


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/35 (25%), Positives = 19/35 (54%)

Query: 80  KSSSSNTKQTDSGPADRYQPTNYHNYPGTNSSNDH 114
           KSS S++  + + P D  + ++  +Y   +S  D+
Sbjct: 131 KSSESDSGASSADPDDELRSSSAFSYIKPSSERDY 165


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.131    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,102
Number of Sequences: 317
Number of extensions: 2341
Number of successful extensions: 18
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 203
length of database: 114,650
effective HSP length: 54
effective length of query: 149
effective length of database: 97,532
effective search space: 14532268
effective search space used: 14532268
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)