Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000100-TA|BGIBMGA000100-PA|undefined
(203 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.039
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 31 0.16
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 28 1.1
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 27 1.5
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 27 1.9
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 1.9
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 1.9
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 27 2.5
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 25 5.9
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 25 7.8
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 7.8
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c... 25 7.8
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 25 7.8
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 32.7 bits (71), Expect = 0.039
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 64 GFRFGDKYIIKVEQVCKSSSSNTKQTDSGPADRYQPTNYHNYPGTNSSNDHKIGYPSNKS 123
G R Y I SSSS++ + S P+ ++ + ++SS+ K S+ S
Sbjct: 138 GTRTSSSYFITSSSSTPSSSSSS--SSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSS 195
Query: 124 GNQSLTSQGPGNYDKGPYGSQGHWK-ESSQYITKTDDFRASTN 165
S +S P S+ K SS +IT T +S++
Sbjct: 196 SKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPASSSSS 238
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 30.7 bits (66), Expect = 0.16
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 81 SSSSNTKQTDSGPADRYQPT--NYHNYPGTNSSNDHKIGYPSNKSGNQSLTSQGPGNYDK 138
S++SN+ +S ++ T N +S + + + N + + GNY+
Sbjct: 517 SNNSNSSNNNSNTSNNNSNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNNSNSGNYNN 576
Query: 139 GPYGS--QGHWKESSQYITKTDDFRASTNFNVDQAGYQAGHNQNQWGN 184
G+ Q H + SS F S++ N ++ Y +NQN +GN
Sbjct: 577 NNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNNNNQN-YGN 623
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 101 NYHNYPGTNSSNDHKIGYPSNKSGNQSLTSQG 132
NY+N N N++ Y +N + +Q SQG
Sbjct: 612 NYNNNNNQNYGNNNNQNYNNNNNSSQGGNSQG 643
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 27.9 bits (59), Expect = 1.1
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 87 KQTDSGPADRYQPTNYHNYPGTNSSNDHKIGYPSNKSGNQSLTSQGPGNYDK 138
+Q+ S PAD+ + H NSS D + S+ S S TS G+ DK
Sbjct: 652 RQSSSLPADKLSSLDIHFEDDYNSSADEEDPEASDISFQYSNTSDKEGSSDK 703
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 83 SSNTKQTDSGPADRYQPTNYHNYPGTNSSNDHKIGYPSNKSGNQSLTSQGPGNYDKGPYG 142
SS+++ + S A + T + + P SSN + +KSG++S G+++ P+G
Sbjct: 118 SSHSRSSSSWSAKLSRFTKHASKPSL-SSNSSDSSF--SKSGSESNALSSRGSFELEPHG 174
Query: 143 SQGHWKESSQYITK 156
H + + ++K
Sbjct: 175 IHRHVSRAKRLLSK 188
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 81 SSSSNTKQTDSGPADRYQPTNYHNYPGTNSSNDHKIGYPSNKSGNQSLTS 130
SSSSN+ +G + R Y N G+ N H G P+ S + + S
Sbjct: 424 SSSSNSNNLSTGMSMRTLGHQYLNLQGSGVKNLHDKGNPTALSKDSEIDS 473
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 82 SSSNTKQTDSGPADRYQPTNYHNYPGTNSS 111
S SN KQ S + Q T+Y++Y GT +
Sbjct: 933 SYSNRKQASSESSPESQSTHYNDYEGTEDN 962
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 87 KQTDSGPADRYQPTNYH-NYPGTNSSNDHKIGYPSNKSGNQSLTSQGPGNYD 137
+QT A Q T++ N N++N G+P N + + S G G Y+
Sbjct: 895 QQTPLTNAATQQTTSFQSNANKVNNANSQPAGFPFNSGASTNAGSNGLGGYN 946
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 82 SSSNTKQTDSGPADRYQPTNYHN-YPGTNSSNDHKIGYPSNKSGNQSL 128
S S+ + DSGP D + +N Y ++S++D I + ++ QSL
Sbjct: 77 SPSSLSRKDSGPGDGLEVNKKNNFYRRSSSTDDFGISHARSRKEIQSL 124
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 141 YGSQGHWKESSQYITKTDDFRASTNFNVDQA 171
YGSQ E + K DD S +F DQA
Sbjct: 644 YGSQSPTSEVTDRYKKLDDTLKSISFRFDQA 674
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 7.8
Identities = 18/102 (17%), Positives = 35/102 (34%)
Query: 62 LNGFRFGDKYIIKVEQVCKSSSSNTKQTDSGPADRYQPTNYHNYPGTNSSNDHKIGYPSN 121
LN G+ + +E+ +SN + T+ + + YH+ S+N +
Sbjct: 14 LNKEESGESNRVNIEEPEHHDNSNKESTNLDDLNMLEEPKYHDNSNKESTNLDDLNMLEE 73
Query: 122 KSGNQSLTSQGPGNYDKGPYGSQGHWKESSQYITKTDDFRAS 163
+ + + D H S++ T DD S
Sbjct: 74 PEHHDNSKKESTNLDDSNMLEEPKHHDNSNKESTNLDDLNMS 115
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.0 bits (52), Expect = 7.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 139 GPYGSQGHWKESSQYI 154
G +GSQGHW SS ++
Sbjct: 425 GFFGSQGHWFTSSVFL 440
>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 95 DRYQPTNYHNYPGTNSSNDHKIGYPSNKSGNQSLTSQG 132
+++ N+ +YPG S HK+ K+G ++ S G
Sbjct: 312 EKHPKVNWVSYPGLESHVSHKLAKKYLKNGYGAVLSFG 349
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 101 NYHNYPGTNSS--NDHKIGYPSNKSGNQSLTSQGPGNYD 137
N +N P N++ N ++ PS + ++ SQ P +YD
Sbjct: 554 NNYNQPYANATMNNSRRLRTPSGERSMRADLSQSPASYD 592
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.131 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 996,154
Number of Sequences: 5004
Number of extensions: 41334
Number of successful extensions: 99
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 16
length of query: 203
length of database: 2,362,478
effective HSP length: 70
effective length of query: 133
effective length of database: 2,012,198
effective search space: 267622334
effective search space used: 267622334
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)
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