Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000100-TA|BGIBMGA000100-PA|undefined
(203 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423... 32 0.28
01_05_0592 - 23483834-23484285,23484357-23484455,23484534-234847... 31 0.65
06_03_0136 + 17056256-17056420,17056864-17057036,17057272-170572... 31 0.86
04_04_1184 + 31558678-31558707,31559485-31559644,31559732-315603... 31 0.86
10_02_0147 - 5855100-5855105,5855176-5855808 30 1.5
08_02_0678 - 19971416-19971930,19971970-19973347,19974122-199745... 29 2.0
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 29 2.0
07_03_0413 + 17854787-17854847,17855362-17855606,17856127-178561... 29 2.6
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526... 29 3.5
11_01_0428 + 3279662-3279784,3281676-3281756,3281845-3281933,328... 28 6.0
07_03_1410 + 26363538-26363777,26365421-26365475,26365553-263656... 27 8.0
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 27 8.0
01_01_1150 + 9161058-9162722,9162837-9162920,9163095-9163199,916... 27 8.0
>01_06_1263 +
35840502-35841308,35841763-35841969,35842272-35842370,
35843361-35843464,35844521-35844698,35844774-35845244,
35845383-35845523,35846290-35846349,35846427-35846490,
35847295-35847524,35847606-35847704
Length = 819
Score = 32.3 bits (70), Expect = 0.28
Identities = 21/91 (23%), Positives = 33/91 (36%)
Query: 91 SGPADRYQPTNYHNYPGTNSSNDHKIGYPSNKSGNQSLTSQGPGNYDKGPYGSQGHWKES 150
+G D Y P + PG N+ Y +S N+S QG Y ++ S
Sbjct: 71 TGATDSYAPYSNSVQPGYNAPQYPNYYYNCPQSTNESSVQQGVDQSSGAAYQPLTSFQNS 130
Query: 151 SQYITKTDDFRASTNFNVDQAGYQAGHNQNQ 181
Y+ T + + + GY +N Q
Sbjct: 131 GSYVGPTSNTYYNAGAHQTAPGYATSNNYYQ 161
>01_05_0592 -
23483834-23484285,23484357-23484455,23484534-23484702,
23485049-23485363,23485561-23485767,23485852-23486106,
23486575-23486736
Length = 552
Score = 31.1 bits (67), Expect = 0.65
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 81 SSSSNTKQTDSGPADRYQPTNYHNYPGTNSSNDHKIGYPSNKSGNQSLTSQGPGNYDKGP 140
S S K+T S A +PT ++ G+ S+ D+ +GNQS + + ++ P
Sbjct: 206 SKESTDKETGSTTAKETEPTEENHPTGSQSATDNVETGKVPPTGNQSAEVETDAHQER-P 264
Query: 141 YGSQGHWKESSQYITKTDDFRASTNFNVDQAG 172
G Q E ++ I +T+ +S FN G
Sbjct: 265 IGDQ-PGVEPNKDIPETERQTSSPPFNNTNVG 295
>06_03_0136 +
17056256-17056420,17056864-17057036,17057272-17057297,
17057524-17057922,17058190-17058265,17058432-17058507,
17058930-17059013,17059446-17059570,17060146-17060389,
17060968-17061031,17061218-17061726
Length = 646
Score = 30.7 bits (66), Expect = 0.86
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 82 SSSNTKQTDSGP--ADRYQPTNYHNYPGTNSSNDHKIGYPS----NKSGNQSLTSQGPGN 135
SS + ++ D GP ADRY + YH+Y +S H +P + SG ++L + G
Sbjct: 552 SSDSREERDRGPPGADRY--SRYHSYDYGPASPSHGRSHPDRGWRSSSGYENLPAD-DGA 608
Query: 136 YDKGPYGSQGHWKESSQYITKTD 158
+ Y S+ + SSQY T ++
Sbjct: 609 WTPHAYSSRQY---SSQYSTSSE 628
>04_04_1184 +
31558678-31558707,31559485-31559644,31559732-31560394,
31560512-31560956,31561090-31561171,31561319-31561534
Length = 531
Score = 30.7 bits (66), Expect = 0.86
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 119 PSNKSGNQSLTSQGPGNYDKGPYGSQGHWKESSQYITKTDDFRASTNFNVDQAGYQAGH- 177
PS G +S S G N D GPY ++ K + I+ D+ R T + G Q G
Sbjct: 330 PSTPVGGRSTASPGDDNTDDGPYFNR---KGGTNEIS-DDEMRLKTRKEIAALGIQLGKM 385
Query: 178 NQNQWGNK 185
N W +K
Sbjct: 386 NIATWASK 393
>10_02_0147 - 5855100-5855105,5855176-5855808
Length = 212
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 75 VEQVCKSSSSNTKQTDSGP-ADRYQPTNYHNYPGTNSSNDHKIGYPSN---KSGNQSLTS 130
++Q S+ +T G +Y+ N PGT SS D ++ + +S N+
Sbjct: 55 MQQARNQFLSSFTETHKGTLVQKYKVKVIANVPGTGSSKDGEVKQAPDGAAQSSNKGAAD 114
Query: 131 QGPGNYDKGPYGSQGHWKESSQ 152
G+ D G G QG + +Q
Sbjct: 115 GSRGDQDDGSQGVQGVGSQGTQ 136
>08_02_0678 -
19971416-19971930,19971970-19973347,19974122-19974518,
19974533-19974645,19977436-19977903,19977935-19978059,
19978192-19978452,19984254-19984647
Length = 1216
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 88 QTDSGPA-DRYQPTNYHNYPGTNSSNDHKI-------GYPSNKSGNQSLTSQGPGNYDKG 139
QT G +YQ + PGT SSND ++ PS++ + GN+ +G
Sbjct: 527 QTHKGTVVQKYQVRVVADVPGTGSSNDGRLKEALDSSAQPSDRGTTDGSAQESDGNHSQG 586
Query: 140 P 140
P
Sbjct: 587 P 587
>01_06_1123 +
34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 82 SSSNTKQTDSGPADRYQPTNYHNYPGTNSSNDHKIGYPSNKSGNQSLTSQGPGNYDKGPY 141
S S + T + + QP Y G N++ SN + + + G D PY
Sbjct: 711 SESRDRSTYNRGSHSAQPPYKSGY-GNNNNAWSSNNNGSNNAWSSTRDYDNGGRSDNNPY 769
Query: 142 GSQGHWKESSQYITKTDDFRASTNFNVDQA-GYQAGHNQNQ-WGN 184
+ W +S Y + + +++++N + A + +N N W N
Sbjct: 770 YNSSTWSSNSTY-SNNAAWSSNSSYNSNSAWSSNSSYNSNSAWSN 813
>07_03_0413 +
17854787-17854847,17855362-17855606,17856127-17856189,
17856276-17856294,17856547-17856645,17856725-17856802,
17856891-17857135,17857796-17857952,17858161-17858303
Length = 369
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 149 ESSQYITKTDDFRASTNFNVDQAGYQAGHNQNQWGNKV 186
ES Q+ K +F +S++F + QAG AG N KV
Sbjct: 5 ESPQWRQKATNFFSSSSFKLKQAGQSAGDNIADVAGKV 42
>04_03_0941 -
20950190-20951088,20952436-20952478,20952580-20952606,
20953189-20953301,20953872-20954715,20955740-20955790,
20956026-20956126,20956205-20956244,20956360-20957124
Length = 960
Score = 28.7 bits (61), Expect = 3.5
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 80 KSSSSNTKQTDSGPADRYQPTNYHNYPGTNSSNDHKIGYPSNKSGNQSLTSQGPGNYDK- 138
K SSSN G + +P+ G N+SN GY N+S T Y+K
Sbjct: 837 KKSSSN--DDGYGGSGYSKPSTGDYDSGKNASNTD--GY-GGSGYNKSSTDNSESGYNKS 891
Query: 139 --GPYGSQGHWKESS--QY-----ITKTDDFRASTNFNVDQAG-YQAGHNQN 180
G YGS G + +SS Y + T D+ + ++ AG Y G+N++
Sbjct: 892 GTGEYGSGGGYNKSSTDNYESGYNKSGTGDYGSGGGYDKSDAGDYTGGYNKS 943
>11_01_0428 +
3279662-3279784,3281676-3281756,3281845-3281933,
3282011-3282085,3282211-3282269,3282316-3282414,
3282762-3283013,3283050-3283180
Length = 302
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 101 NYHNYPGTNSSNDHKIGYPSNKSGNQSLTSQGPGNYDKGPYGSQG-HWKESSQYITKTDD 159
+Y+NY G G + G +G YD G YG +G ++++ +Y + +D
Sbjct: 195 DYYNYRGRGRGRFRGRGRGRGRGGYYGGGRRGGYGYDYG-YGGRGDYYEDQGEYFEEPED 253
Query: 160 F 160
+
Sbjct: 254 Y 254
>07_03_1410 +
26363538-26363777,26365421-26365475,26365553-26365644,
26365732-26365787,26366026-26366101,26366790-26366856,
26367197-26367263,26368276-26368342,26368759-26368842,
26369749-26369904,26370641-26370718,26371323-26371391,
26371476-26371541,26371623-26371751,26372862-26372951,
26373306-26373371,26373768-26373836,26373903-26374007,
26374374-26374499,26374687-26374745,26374832-26374868,
26375370-26375519
Length = 667
Score = 27.5 bits (58), Expect = 8.0
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 7/122 (5%)
Query: 69 DKYIIKVEQVCKSSSSNTKQTDSGPADRYQPT-NYHNYPGTNSSNDHKIGYPSNKSGNQS 127
D Y E+ SS+++T T P+ Y P N H++P + S + G + S ++
Sbjct: 31 DAYRKLAERKASSSAASTA-TSPLPSAAYSPVKNSHHHPASRVSQESCFGKVESLSPSRL 89
Query: 128 LTSQGPGNYDKGPYGSQGHWKESSQYITKTDDFRASTNFNVDQAGYQAGHN--QNQWGNK 185
GN SQG+ + S ++ + F Q A H + W K
Sbjct: 90 SQPNASGN---AVNNSQGNMSKVSVHLFLHSTGVIAAKFQYHQKLVDAVHKIPKASWNGK 146
Query: 186 VR 187
R
Sbjct: 147 ER 148
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 27.5 bits (58), Expect = 8.0
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 81 SSSSNTKQTDSGP-ADRYQPTNYHNYPGTNSSNDHKIGYPSNKSGNQSLTSQGPGNYDKG 139
S S+T+ +DSG ++ Y ++ T+SS+DH+ + ++ +++G + K
Sbjct: 186 SDYSDTQSSDSGSESESYSSSSLD----TSSSSDHRHKRRKSSKKDKHRSAKGKSKHKKT 241
Query: 140 PYGSQGHWKESSQ-YITKTDDFRAS 163
S+G ++S + Y + +DD +S
Sbjct: 242 KRKSRGTKRKSKRSYRSSSDDSDSS 266
>01_01_1150 +
9161058-9162722,9162837-9162920,9163095-9163199,
9163310-9163418,9163956-9164107,9164210-9164356
Length = 753
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 106 PGTNSSNDHKIGYPSNKSGNQSLTSQGPGNYDKGPYGSQGHWKESSQ 152
PGTN D +++SG+ S SQ P + KG S+G + +S+
Sbjct: 248 PGTNG--DKSANPEADQSGSTSTISQFPQHGPKGDRSSRGRGRPNSR 292
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.131 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,227,252
Number of Sequences: 37544
Number of extensions: 249376
Number of successful extensions: 441
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 16
length of query: 203
length of database: 14,793,348
effective HSP length: 79
effective length of query: 124
effective length of database: 11,827,372
effective search space: 1466594128
effective search space used: 1466594128
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)
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