Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000099-TA|BGIBMGA000099-PA|undefined
(182 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil... 33 0.15
At4g15180.1 68417.m02328 SET domain-containing protein contains ... 33 0.15
At3g47850.1 68416.m05216 expressed protein 33 0.15
At5g60030.1 68418.m07527 expressed protein 31 0.35
At5g02570.1 68418.m00191 histone H2B, putative similar to histon... 31 0.60
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i... 31 0.60
At3g04590.2 68416.m00489 DNA-binding family protein contains a A... 30 1.1
At3g04590.1 68416.m00488 DNA-binding family protein contains a A... 30 1.1
At5g06680.1 68418.m00754 tubulin family protein similar to SP|Q9... 29 1.4
At3g28770.1 68416.m03591 expressed protein 29 1.4
At2g02790.1 68415.m00222 calmodulin-binding family protein very ... 29 1.4
At4g39320.1 68417.m05567 microtubule-associated protein-related ... 29 1.8
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor... 29 2.4
At3g46750.1 68416.m05075 hypothetical protein 28 3.2
At2g40820.1 68415.m05038 proline-rich family protein contains pr... 28 3.2
At1g17820.1 68414.m02206 expressed protein 28 3.2
At3g05900.1 68416.m00664 neurofilament protein-related similar t... 28 4.3
At4g19590.1 68417.m02879 DNAJ heat shock N-terminal domain-conta... 27 5.6
At4g17000.1 68417.m02564 hypothetical protein 27 5.6
At4g15500.1 68417.m02368 UDP-glucoronosyl/UDP-glucosyl transfera... 27 5.6
At4g00290.1 68417.m00036 mechanosensitive ion channel domain-con... 27 5.6
At3g56870.1 68416.m06326 hypothetical protein 27 5.6
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 27 5.6
At3g09080.1 68416.m01067 transducin family protein / WD-40 repea... 27 5.6
At1g69760.1 68414.m08027 expressed protein 27 5.6
At1g59850.1 68414.m06741 expressed protein 27 5.6
At5g58880.1 68418.m07377 hypothetical protein 27 7.4
At5g55300.1 68418.m06891 DNA topoisomerase I identical to Swiss-... 27 7.4
At1g76870.1 68414.m08945 hypothetical protein 27 7.4
At1g06980.1 68414.m00743 expressed protein similar to hypothetic... 27 7.4
At5g57380.1 68418.m07169 fibronectin type III domain-containing ... 27 9.8
At5g08520.1 68418.m01011 myb family transcription factor contain... 27 9.8
At4g29560.1 68417.m04215 expressed protein 27 9.8
At4g12610.1 68417.m01987 transcription initiation factor IIF alp... 27 9.8
At3g20780.1 68416.m02628 topoisomerase 6 subunit B (TOP6B) nearl... 27 9.8
>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646; supporting cDNA
gi|13160645|dbj|AB036832.1|;
Length = 876
Score = 32.7 bits (71), Expect = 0.15
Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Query: 34 KDKKQEPKSQVTSGRKVLSKRKGDEELMMVNKKCKLSTELENLIRNRQEPSKHPLSVDSG 93
+ KK+ ++ SG+K K K + L +V + LS E+ N+ + P +P D+
Sbjct: 544 QQKKEAEENLEKSGKKSSKKTKKKDSLNIVEEAQVLSVEVNNVAQEEASPINNPKDTDAS 603
Query: 94 GKSVNYCSQQKITSPC--VSET--NPIRQPKVMTEIKPNMPANPDLLISDKPNLIPQSLN 149
++ SP +SE N + M +K N + S K +++ N
Sbjct: 604 FTPAKKTTESN-ASPLKKISEVTDNTEDLNRSMQVLKENADMGDNFGSSQKDDIV-GGTN 661
Query: 150 QHSPLDRSNTTTKEKK 165
+ + + KEKK
Sbjct: 662 KEDQVTGGAKSKKEKK 677
>At4g15180.1 68417.m02328 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 2326
Score = 32.7 bits (71), Expect = 0.15
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 20/135 (14%)
Query: 19 SLNEHSPLDRSNTPTKDKKQEPKSQVTSGRKVLSKRKGDEEL-----MMVNKKCKLSTEL 73
S +E SP DRS D++ + + + ++R G E+ + + C+ TEL
Sbjct: 480 SYSEWSPHDRSRP--SDRRDYIPNFMEDTQSDRNRRNGHREISRKSGVRERRDCQTGTEL 537
Query: 74 ENLIRNRQEPSKHPLSVDSG--GKSVNY-----------CSQQKITSPCVSETNPIRQPK 120
E + ++ K S GK++ Y C KI PC + P++ +
Sbjct: 538 EIKHKYKESNGKESTSSSKELQGKNILYNNSLLVEKNSVCDSSKIPVPCATGKEPVQVGE 597
Query: 121 VMTEIKPNMPANPDL 135
TE P+M + D+
Sbjct: 598 APTEELPSMEVDMDI 612
>At3g47850.1 68416.m05216 expressed protein
Length = 322
Score = 32.7 bits (71), Expect = 0.15
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 129 MPANPDLLISDKPNLIPQSLNQHSPLDRSNTTTKEKKQEPKSQETSGRKV 178
+P NP+L +S K L+ N P + + ++ K+K E K +E G +V
Sbjct: 47 LPLNPNLNLSVKTELVTDQENPILPSEANGSSGKQKLFEVKREEICGNRV 96
Score = 30.3 bits (65), Expect = 0.80
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 1 MPANPDLLISDKPNLIPQSLNEHSPLDRSNTPTKDKKQEPKSQVTSGRKVLSKRKGDE 58
+P NP+L +S K L+ N P + + + K K E K + G +V KGDE
Sbjct: 47 LPLNPNLNLSVKTELVTDQENPILPSEANGSSGKQKLFEVKREEICGNRV----KGDE 100
>At5g60030.1 68418.m07527 expressed protein
Length = 292
Score = 31.5 bits (68), Expect = 0.35
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 28 RSNTPTKDKKQEPKSQ---VTSGRKVLSKRKGDEELMMVNKKCKLSTELENL 76
RS K+KK++ KS V+ RK KRK DEE+ +K K +L+ +
Sbjct: 239 RSGERKKEKKKKRKSDEEIVSEERKSKKKRKSDEEMGSEERKSKKKRKLKEI 290
>At5g02570.1 68418.m00191 histone H2B, putative similar to histone
H2B-2 Lycopersicon esculentum GI:3021483, Gossypium
hirsutum SP|O22582, Asparagus officinalis GI:563329;
contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 132
Score = 30.7 bits (66), Expect = 0.60
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 32 PTKDKKQEPKSQVTSGRKVLSKRKGDEELMMVNKKCKLSTELENLIRNRQEPSKHPLSVD 91
P +KK K+ K ++K G E++ KK K STE + + HP +
Sbjct: 3 PKAEKKPAEKAPAPKAEKKIAKEGGTSEIVKKKKKTKKSTETYKIYIFKVLKQVHP-DIG 61
Query: 92 SGGKSV 97
GK++
Sbjct: 62 ISGKAM 67
>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
identical to cDNA CIP4.1 mRNA for COP1-interacting
protein 4.1, GI:13160649
Length = 976
Score = 30.7 bits (66), Expect = 0.60
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 34 KDKKQEPKSQVTSGRKVLSKRKGDEELMMVNKKCKLSTELENLIRNRQEPSKHPLSVDS 92
+ KK+ ++ SG+K + K + L +V + LS E+ N+ + P +P D+
Sbjct: 694 QQKKEAEENLEKSGKKSSKRSKKKDSLNIVEEAQVLSVEVNNVAQEEASPINNPKDTDA 752
>At3g04590.2 68416.m00489 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 411
Score = 29.9 bits (64), Expect = 1.1
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Query: 17 PQSLNEHSPLDRSNTPTKDKKQEPKSQVTSGRKVLSKRKGDEELMMVNKKCKLSTELENL 76
PQ +H P D S++ P S VT+ + + +++G + ++ + +L +
Sbjct: 70 PQPQPQHQPNDGSSSLAVYPHSVPSSAVTAPMEPVKRKRGRPRKYVTPEQALAAKKLASS 129
Query: 77 IRNRQEPSKHPLSVDSGGK-SVNYCSQQKITSPCVSETNPIRQPKVM 122
+ + L+ +GG S N S +K V +T P ++
Sbjct: 130 ASSSSAKQRRELAAVTGGTVSTNSGSSKKSQLGSVGKTGQCFTPHIV 176
>At3g04590.1 68416.m00488 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 308
Score = 29.9 bits (64), Expect = 1.1
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Query: 17 PQSLNEHSPLDRSNTPTKDKKQEPKSQVTSGRKVLSKRKGDEELMMVNKKCKLSTELENL 76
PQ +H P D S++ P S VT+ + + +++G + ++ + +L +
Sbjct: 70 PQPQPQHQPNDGSSSLAVYPHSVPSSAVTAPMEPVKRKRGRPRKYVTPEQALAAKKLASS 129
Query: 77 IRNRQEPSKHPLSVDSGGK-SVNYCSQQKITSPCVSETNPIRQPKVM 122
+ + L+ +GG S N S +K V +T P ++
Sbjct: 130 ASSSSAKQRRELAAVTGGTVSTNSGSSKKSQLGSVGKTGQCFTPHIV 176
>At5g06680.1 68418.m00754 tubulin family protein similar to
SP|Q96CW5 Gamma-tubulin complex component 3 {Homo
sapiens}
Length = 838
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 34 KDKKQEPKSQVTSGRKVLSKRKGD 57
K+K QEP S ++ GRK L++R G+
Sbjct: 760 KNKSQEPGSWISEGRKGLTQRAGE 783
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 29.5 bits (63), Expect = 1.4
Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 11/154 (7%)
Query: 27 DRSNTPTKDKKQEPKSQVTSGRKVLSKRKGDEELMMVNKKCKLSTELENLIRNRQEPSKH 86
D +N + K++ KS+V + S KG EE NK +LEN + Q SK
Sbjct: 666 DSTNDNNMESKEDTKSEVEVKKNDGSSEKG-EEGKENNKDSMEDKKLEN--KESQTDSKD 722
Query: 87 PLSVDSGGKSVNYCSQQKITSPCVSETNPIRQPKVMTEIKPNMPANPDLLISDKPNLIPQ 146
SVD + + V ++ K + K N + + +K +
Sbjct: 723 DKSVDDKQEEAQIYGGESKDDKSVEAKGKKKESKENKKTKTN-----ENRVRNKEENVQG 777
Query: 147 SLNQHSPLDRSNTTTKEKKQEPKSQETSGRKVLS 180
+ + +++ K++ ++ KS ET K LS
Sbjct: 778 NKKESEKVEKGE---KKESKDAKSVETKDNKKLS 808
Score = 27.5 bits (58), Expect = 5.6
Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 4/140 (2%)
Query: 34 KDKKQEPKSQVTSGRKVLSKRKGDEELMMVNKKCKLSTELENLIRNRQEPSKHPLSVDSG 93
K K Q+ K + + SK++ +E + KK + T+ + N + K
Sbjct: 1030 KKKSQDKKREEKDSEERKSKKEKEESRDLKAKKKEEETKEKKESENHKSKKKEDKKEHED 1089
Query: 94 GKSVNYCSQQKITSPCVSETNPIRQPKVMTEIKPNMPANPDLLISDKPNLIPQSLNQHSP 153
KS+ + K E+ ++ + +++ N + DK + +QH
Sbjct: 1090 NKSMKK-EEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKKKEDKNE---KKKSQHVK 1145
Query: 154 LDRSNTTTKEKKQEPKSQET 173
L + + KEKK+ + ET
Sbjct: 1146 LVKKESDKKEKKENEEKSET 1165
>At2g02790.1 68415.m00222 calmodulin-binding family protein very low
similarity to SP|P12036 Neurofilament triplet H protein
{Homo sapiens}; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 636
Score = 29.5 bits (63), Expect = 1.4
Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 14/162 (8%)
Query: 19 SLNEHSPLDRSNTPTKDKKQEPKSQVTSGRKVLSKRKGDEELMMVNKKCKLSTELENLIR 78
S +S RS + K+ + T G++ LSK + D+ K E ++
Sbjct: 289 STTANSSTSRSTADNEKPKRTVRKASTLGKE-LSKIENDKSKQSSRKSTSAIKEGSSVEV 347
Query: 79 NRQEP--SKHPLSVDSG-GKSVNYCSQQKIT-SPCVSETNPIRQPKVMTEIKPNMPANPD 134
++P S S+ +G GK+ +++K + V + PI + V P
Sbjct: 348 KDEKPRISHKKASLSNGIGKATRKSAEKKKEIADAVQKELPIEEVSVSLVDAPE------ 401
Query: 135 LLISDKPNLIPQSLNQHSPLDRSNTTTKEKKQEPKSQETSGR 176
+K NLIP ++++ S LD+ + K E T+ R
Sbjct: 402 ---DEKMNLIPVTISKESDLDKDEKSLVLDKPEQDELRTAER 440
>At4g39320.1 68417.m05567 microtubule-associated protein-related
contains weak similarity to microtubule-associated
protein 1B (MAP 1B) (Swiss-Prot:P46821) [Homo sapiens]
Length = 166
Score = 29.1 bits (62), Expect = 1.8
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 13 PNLIPQSLNEHSPLDRSNTPTKDKKQ---EPKSQVTSGRKVLSKRKGDEELMMVNKKCKL 69
P IP + + + L+ NTPTK+ K E K VT R K K E+M V + K
Sbjct: 59 PEKIPVTDDLKTALEEENTPTKEAKSPATETKYSVTEKRAPADK-KITPEMMPVTEDLKT 117
Query: 70 STELE 74
E E
Sbjct: 118 VLEEE 122
>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
(CPK2) identical to calcium-dependent protein kinase
isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
contains protein kinase domain, Pfam:PF00069; contains
EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 646
Score = 28.7 bits (61), Expect = 2.4
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 103 QKITSPCVSETNPIRQPKVMTEIKPNMPANPDLLISDKPNLIPQSLNQHSPLDRSNTTTK 162
+ IT P S+TNP + K EI+P L K ++P+ Q P + S
Sbjct: 62 EPITMPS-SKTNPETKLKPDLEIQPEEKKEKVLAEETKQKVVPEESKQEVPPEESKREVV 120
Query: 163 EKKQEPKSQETSGRK 177
+ + K + S K
Sbjct: 121 VQPESAKPETKSESK 135
>At3g46750.1 68416.m05075 hypothetical protein
Length = 415
Score = 28.3 bits (60), Expect = 3.2
Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 5/134 (3%)
Query: 17 PQSLNEHSPLDRSNTPTKDKKQEPKSQVTSGRKVLSKRKGDEELMMVNKKCKLSTELENL 76
P ++ +P + T + ++ P V + VLS ++ K C S +
Sbjct: 139 PMYESKKAPEELKETARQHPRENP---VITETNVLSVLPAKQDAEQEQKDCNGSKTEHPV 195
Query: 77 IRNRQEPS--KHPLSVDSGGKSVNYCSQQKITSPCVSETNPIRQPKVMTEIKPNMPANPD 134
I + S K DS ++ S +K C S+ PI K +TE A
Sbjct: 196 ISEKNVLSDVKQEKPADSDTTTIVTESSEKTRKECTSQQEPISPSKTVTETVTEKLAPGY 255
Query: 135 LLISDKPNLIPQSL 148
+SD I + +
Sbjct: 256 AKVSDATQAITKKI 269
>At2g40820.1 68415.m05038 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 903
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 98 NYCSQQKITSPCVSETNPIRQPKVMTEIKPNMPANPDLLISDKPNLIPQSLNQHSPLDRS 157
+Y + +P ++ TNP Q P P P + P IP+S+N S +
Sbjct: 736 SYNHHSSMPNPPMTNTNPQMQQPYYPP--PMQPPPPPMNSGYMPTYIPKSVNDSSMPNPP 793
Query: 158 NTTTKEKKQEP 168
T + Q+P
Sbjct: 794 MNNTNPQMQQP 804
>At1g17820.1 68414.m02206 expressed protein
Length = 803
Score = 28.3 bits (60), Expect = 3.2
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 13 PNLIPQSLNEHSPLDRSNTPTKDKKQEPKSQVTSGRKVLSK-RKGDEELMMVNKKCKLST 71
P L+P S N+ R ++ Q P V S + S+ +K M++ K+
Sbjct: 720 PLLVPSSSNKQETNSRGSSREVSAVQSPSRSVASSEEDDSRGKKQGRRARMLDLGKKMGE 779
Query: 72 ELENLIRNRQEPSK 85
+LE R+ +E S+
Sbjct: 780 KLEEKRRHMEEKSR 793
>At3g05900.1 68416.m00664 neurofilament protein-related similar to
NF-180 (GI:632549) [Petromyzon marinus] similar to
Neurofilament triplet H protein (200 kDa neurofilament
protein) (Neurofilament heavy polypeptide) (NF-H)
(Swiss-Prot:P12036) [Homo sapiens]
Length = 673
Score = 27.9 bits (59), Expect = 4.3
Identities = 20/100 (20%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 66 KCKLSTELENLIRNRQEPSKHPLSVDSGGKSVNYCSQQKITSPCVSETNPIRQPKVMTEI 125
K +L +LE++I ++ + + CS++ +++ S T+PI++ TE
Sbjct: 281 KVELEGKLEDVIVEEKDSEINSKDEKTSESGSALCSEEILSTIQESNTDPIKE----TEG 336
Query: 126 KPNMPANP-DLLISDKPNLIPQSLNQHSPLDRSNTTTKEK 164
+ P + + I+++ +++ + N+ P + S + EK
Sbjct: 337 DASYPIDVIEKAITEEKHVVDEPANEEKPSESSAALSPEK 376
>At4g19590.1 68417.m02879 DNAJ heat shock N-terminal
domain-containing protein protein YJL162c, Saccharomyces
cerevisiae, PIR2:S56945; contains Pfam PF00226: DnaJ
domain;
Length = 345
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 112 ETNPIRQPKVMTEIKPNMPANPDLLISDKPNLIPQSLNQH-SPLDRSNTTTKEKKQEPKS 170
+ P ++P + +PN P PN Q NQ P + + KQ P
Sbjct: 133 QKQPPKKPPNQPKQQPNQQKQPPDQQKQPPNQPRQPPNQQKQPQNEPKQPPNQPKQPPNQ 192
Query: 171 QETSGR 176
T+GR
Sbjct: 193 ASTNGR 198
>At4g17000.1 68417.m02564 hypothetical protein
Length = 674
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 45 TSGRKVLSKRKGDEELMMVNKKCKLSTELENLIRNRQEPSKHPLSVDSGG 94
++G +V K DEEL++ NK +LS + + N+ + + P + G
Sbjct: 305 SNGMEVEDKTSRDEELLVENKSEELSDTSKANMNNQLQAREDPAVIKESG 354
>At4g15500.1 68417.m02368 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 475
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 82 EPSKHPLSVDSGGKSVNYCSQQKITS-PCVS 111
EP PL ++ GK V +C Q+K+ + P V+
Sbjct: 322 EPHVLPLELEEKGKIVEWCQQEKVLAHPAVA 352
>At4g00290.1 68417.m00036 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein weak similarity to SP|P77338
Potassium efflux system kefA {Escherichia coli};
contains Pfam profile PF00924: Mechanosensitive ion
channel
Length = 497
Score = 27.5 bits (58), Expect = 5.6
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 11 DKPNLIPQSLNEHSPLDRSNTPTKDKKQEPKSQVTSGRKVLSKRKGDEELMMVNKKCKLS 70
D ++IPQ NE + RSNT K+ P ++ K ++ L+ + K+ +
Sbjct: 409 DDLDMIPQISNEIKEMLRSNTKVFLGKEAPHCYLSRVEKSFAELTIGCNLIRMGKEELYN 468
Query: 71 TELENLIRNRQEPSKHPLSV 90
T+ E L+ + KH +S+
Sbjct: 469 TQQEVLLEAVKIIKKHGVSL 488
>At3g56870.1 68416.m06326 hypothetical protein
Length = 670
Score = 27.5 bits (58), Expect = 5.6
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 19 SLNEHSPLDRSNTPTKDKKQEPKSQVTSGRKVLSKRKGDEELMMVNKKC-KLSTELENLI 77
SL+ P+ +T +K++ + S GD +L + K+ ++ E
Sbjct: 349 SLDNLQPVPEDSTSSKEEDHLTERLQQSLYSKHEDEAGDHKLSQLYKEPDEVQKVAETDS 408
Query: 78 RNRQEPSKHPLSVDSGGKSVNYCSQQKITSPCVSETNPIRQPK 120
+Q+P P ++ SG K+++ SQ+K+ +P ++ K
Sbjct: 409 IQQQQPHHQPENLLSGRKALSPTSQEKLRKAMEHPDSPEKRSK 451
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 95 KSVNYCSQQKITSPCVSETNPIRQPKVMTEIKPNMPANPDLLISDKPNLIPQSLNQHSPL 154
K +N + ++ + P E+ +QP E + P+NP + P Q P
Sbjct: 422 KEINPPNLEEPSKPKPEESPKPQQPSPKPETPSHEPSNPKEPKPESPKQESPKTEQPKPK 481
Query: 155 DRSNTTTKEKKQEPKSQE 172
S K++ PK ++
Sbjct: 482 PESPKQESPKQEAPKPEQ 499
>At3g09080.1 68416.m01067 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats; similar to
JNK-binding protein JNKBP1 (GP:6069583) [Mus musculus]
Length = 1026
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 18 QSLNEHSPLDRSNTPTKDKKQEPKSQVTSGRKVLSKRKGDEELMMVNKKCK 68
+S+ EH PLD N + +E Q + +V DE L C+
Sbjct: 902 RSIQEHIPLDTVNDQSSHSSEEHPEQDKTSSEVFHDTLADESLQERITSCR 952
>At1g69760.1 68414.m08027 expressed protein
Length = 177
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/74 (24%), Positives = 35/74 (47%)
Query: 31 TPTKDKKQEPKSQVTSGRKVLSKRKGDEELMMVNKKCKLSTELENLIRNRQEPSKHPLSV 90
T + K+Q+P S +S +VL+ K + E + + L E+ N +N ++P
Sbjct: 25 TQEETKRQKPSSSSSSYNQVLTLLKDEAENDITSLITTLQQEISNEEQNAAVFEENPSLS 84
Query: 91 DSGGKSVNYCSQQK 104
S S + C+ ++
Sbjct: 85 SSCSSSSSSCTSKE 98
>At1g59850.1 68414.m06741 expressed protein
Length = 498
Score = 27.5 bits (58), Expect = 5.6
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 21 NEHSPLDRSNTPTKDKKQEPKSQVTSGRKVLSKRKGDEELMMVNKKCKLSTELENLIRNR 80
N+ PLDR +TP KD +QE V S K G + ++ K K+ N +
Sbjct: 343 NDVEPLDRGDTP-KDVEQE---AVVSKEKRNRSTLGAKRVLFPAKMHKVKENGSNKSQVV 398
Query: 81 QEPSKHPLSVDSGGKS 96
Q + DSG S
Sbjct: 399 QSSDEESPKTDSGSSS 414
>At5g58880.1 68418.m07377 hypothetical protein
Length = 1088
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/92 (17%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 57 DEELMMVNKKCKLSTELENLIRNRQEPSKHPLSVDSGGKSVNYCSQQKITSPCVSETNPI 116
++ L + K+ + + ++++ + E + ++ D + C + SE +
Sbjct: 378 EQNLPLNGKEATIEDDDKSVVSRKSEEKEVEMN-DETDSNKEECDDSSCSEESESELCRL 436
Query: 117 RQPKVMTEIKPNMPANPDLLISDKPNLIPQSL 148
+ ++ I +M NP L++ N IP +L
Sbjct: 437 NKAELREAICQSMDNNPGYLVNQARNSIPSTL 468
>At5g55300.1 68418.m06891 DNA topoisomerase I identical to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 916
Score = 27.1 bits (57), Expect = 7.4
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 21 NEHSPLDRSNTPTKDKKQEP-------KSQVTSGRKVLSKRKGDEELMMVNKKCKLSTEL 73
N PLDR++ KD+ + + ++ SG ++ DE+ +V K + + +
Sbjct: 154 NGDRPLDRASRIIKDESDDETPISSMFRKKIDSGMSGGNQLSNDEKKPLVQKLHQNGSTV 213
Query: 74 ENLIRNRQEPSKHPLSVDSGGKSVNYCSQQKITSPCVSETNPIRQPKVMTEI 125
+N + N + K PL +S S + S +K + ++Q V EI
Sbjct: 214 KNEVPNGKVLGKRPLEKNS---SADQSSLKKAKISASPTSVKMKQDSVKKEI 262
>At1g76870.1 68414.m08945 hypothetical protein
Length = 385
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 12 KPNLIPQSLNEHSPLDRSNTPTKDKKQEPKSQVTSGRKVLSKRKGDEELMMVN 64
+PN I Q+ +H P R ++ + + V G+K +S+ D+EL +++
Sbjct: 21 RPNAINQNQKQHHPNSRQDSGFNNTMDTRHNNVDRGKKSMSE---DDELCLLS 70
>At1g06980.1 68414.m00743 expressed protein similar to hypothetical
protein GI:2347189 from [Arabidopsis thaliana]
Length = 169
Score = 27.1 bits (57), Expect = 7.4
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 15 LIPQSLNEHSPLDRSNTPTKDKKQEPKSQVTSGRKVLSKRKGDEELMMVNKK 66
LIP S R +TP + K + S +GR++ KGDEE + + +K
Sbjct: 80 LIPDSSLPEKKRRRKDTPRRKKNLQNPSADAAGREI----KGDEECVKLCEK 127
>At5g57380.1 68418.m07169 fibronectin type III domain-containing
protein / PHD finger protein-related contains Pfam
profiles PF00041: Fibronectin type III domain, PF00628:
PHD-finger
Length = 600
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 132 NPDLLISDKPNLIPQSLNQHSPLDRSNTTTKEKK 165
N LI + NL+ + L + S DR N+ KEKK
Sbjct: 69 NKPKLIENLLNLVSRPLGETSCSDRRNSRKKEKK 102
>At5g08520.1 68418.m01011 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 298
Score = 26.6 bits (56), Expect = 9.8
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 79 NRQEPSKHPLSVDSGGKSVNYCSQQKITSPCVSETNPIRQPKVMTEIKPNMPANPDLLIS 138
N + P G KS Q P + T I QP V T + N+PA P +
Sbjct: 208 NNNNNNSSPAVAGGGNKSAKQAVSQAPPGPPMYGTPAIGQPAVGTPV--NLPAPPHMAYG 265
Query: 139 DKPNLIPQSL 148
+P S+
Sbjct: 266 VHAAPVPGSV 275
>At4g29560.1 68417.m04215 expressed protein
Length = 493
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 127 PNMPANPDLLISDKPNLIPQSLNQHSPLDRSNTTTKEKKQEPKSQETSGRKVL 179
P+ A L + NL S + +P++RS+ + KKQ ++ +KVL
Sbjct: 15 PSPEAEASLWLDQASNLFSSSSSAAAPINRSSFVSLLKKQCDQNSSPVTKKVL 67
>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
subunit (TFIIF-alpha) family protein low similarity to
SP|Q05913 Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha) (Transcription factor 5, large
chain) (TF5A) {Drosophila melanogaster}; contains Pfam
profile PF05793: Transcription initiation factor IIF,
alpha subunit (TFIIF-alpha)
Length = 543
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 26 LDRSNTPTKDKKQEPKSQVTSGRKVLSKRKGDEEL--MMVNKKCKLSTELENLIRNR 80
+ +SNTPTK K EP S S + ++E+ +++ KK + +L + + R
Sbjct: 452 VSKSNTPTKAVKAEPASAPASSSSAATGPVTEDEIRAVLMEKKQVTTQDLVSRFKAR 508
>At3g20780.1 68416.m02628 topoisomerase 6 subunit B (TOP6B) nearly
identical to topoisomerase 6 subunit B [Arabidopsis
thaliana] GI:12331188
Length = 670
Score = 26.6 bits (56), Expect = 9.8
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 39 EPKSQVTSGRKVLSKRKGDEELMMVNKKCKLSTELENLIRNRQEPSKHPLSVDSGGKSVN 98
E Q+T K KR G+E+++M++K K E L +++ ++H VD ++
Sbjct: 574 EVLKQMTEEHKTKRKRYGEEDIVMLDKVSKQIITKETL---KEKLAEHVEQVDY-EMALE 629
Query: 99 YCSQQKIT 106
Y +Q ++
Sbjct: 630 YATQSGVS 637
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.305 0.124 0.343
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,689,782
Number of Sequences: 28952
Number of extensions: 203634
Number of successful extensions: 568
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 51
length of query: 182
length of database: 12,070,560
effective HSP length: 77
effective length of query: 105
effective length of database: 9,841,256
effective search space: 1033331880
effective search space used: 1033331880
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 56 (26.6 bits)
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