Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000098-TA|BGIBMGA000098-PA|undefined
         (299 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    25   0.90 
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    25   0.90 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   6.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   6.4  

>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 189 VIPNLKTAQSEITREMRGIIDEKVEKY 215
           ++ N +  Q EI +EM  ++DE+   Y
Sbjct: 313 LLANHREVQEEILKEMEAVLDEEPPTY 339


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 189 VIPNLKTAQSEITREMRGIIDEKVEKY 215
           ++ N +  Q EI +EM  ++DE+   Y
Sbjct: 313 LLANHREVQEEILKEMEAVLDEEPPTY 339


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 107 DHLIFQKINRTIRDSMWPNRL 127
           +HLIFQ + R  RD  +  R+
Sbjct: 171 EHLIFQALLRMDRDISYSQRM 191


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 107 DHLIFQKINRTIRDSMWPNRL 127
           +HLIFQ + R  RD  +  R+
Sbjct: 171 EHLIFQALLRMDRDISYSQRM 191


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,903
Number of Sequences: 317
Number of extensions: 2630
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 299
length of database: 114,650
effective HSP length: 56
effective length of query: 243
effective length of database: 96,898
effective search space: 23546214
effective search space used: 23546214
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)