Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000098-TA|BGIBMGA000098-PA|undefined
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    29   1.1  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    27   3.3  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   4.3  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    26   7.5  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   10.0 
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    25   10.0 
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   10.0 

>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 250 NHNLFSHIKLSTVYRDKYSMT-------TDVEFVESIVDIVKDAMICKKGMTK 295
           +H++FSHI+ S +    Y  T       TD+++VE  VD +      K  MTK
Sbjct: 163 HHHVFSHIRDSLLQNLLYMFTKKRLYEPTDMKYVEVCVDSITSLSFDKTDMTK 215


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 2   ENSEKENKITETPMEDENNEEPDWPHIPKFKK 33
           ENS+K+++IT+    DE +E  D    PK  K
Sbjct: 712 ENSQKQSEITKKRGRDEEDEPSDLHSSPKRPK 743


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 80  DCMDVENRPRGCAVFKHAYRERYPAANDHLIFQKINRTIRDSMWPNRLGFSYTLRDILRS 139
           D +DV     GC V +  +    PA  + L+   +   +  ++  +  G +Y L+ +L  
Sbjct: 492 DPLDVSTHRHGCCVVQRCFDHASPAQIEQLVEHIVPHAL--TLVQDAFG-NYVLQYVLEL 548

Query: 140 VNPNQMQ 146
            NPN  +
Sbjct: 549 NNPNHTE 555


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 30  KFKKHKGRLVSEMRELMYGYAQHRRMDIYKRLLQVELC 67
           + KK   +L      L  GY +H+R +I  +L+++  C
Sbjct: 725 ELKKRYEKLSDRYNSLTPGYHKHKRQEIKNKLIKLIEC 762


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 8   NKITETPMEDENNEE 22
           N +  TP +DENNEE
Sbjct: 255 NAVPSTPADDENNEE 269


>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 89  RGC-AVFKHAYRERYPAANDHLIFQKINRTIRDSMWPNRLGFSYTLRDILRSVNPNQMQ 146
           R C  VF H ++     + + L+ Q    +I D M     G  ++LR++++ +  +Q Q
Sbjct: 11  RKCECVFAHRWKPSDRNSMETLVSQLEQNSIEDDMEKLIFGVVFSLRNMVKKITADQDQ 69


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 53  RRMDIYKRLLQVELCRNIALIHEENGYDCMDVENRPRGCAVFKHAYRERYPAAN 106
           RR  + +R+ +     N  L   EN + C+ +EN      V    +RE Y   N
Sbjct: 163 RRKILERRMRKRSNLSNRQLNTSENNWTCLSIENFGISIHVITKNFREYYKLDN 216


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,018
Number of Sequences: 5004
Number of extensions: 56600
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 8
length of query: 299
length of database: 2,362,478
effective HSP length: 72
effective length of query: 227
effective length of database: 2,002,190
effective search space: 454497130
effective search space used: 454497130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)