Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000098-TA|BGIBMGA000098-PA|undefined
         (299 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57583| Best HMM Match : DUF572 (HMM E-Value=2.1)                    33   0.21 
SB_19618| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)            29   3.5  
SB_34255| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             29   6.1  
SB_24188| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)                28   8.1  
SB_4089| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_57583| Best HMM Match : DUF572 (HMM E-Value=2.1)
          Length = 638

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 126 RLGFSYTLRDILRSVNPNQMQQYRQIDYNDTVFTPQQIRGTNIRNDGPTLNLLDKAILKD 185
           RLG   TL   L   NPN  +   +++ N++V+     R T + N+    N + +    +
Sbjct: 76  RLGLPSTLTSALDPANPNTFENASKVNQNESVYFCPGCRRTRLENESVDANQVMRFRRNE 135

Query: 186 K--YRVIPNLKTAQSEITR 202
              Y +I   KT Q +I R
Sbjct: 136 SGHYELIAR-KTCQEKIAR 153


>SB_19618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 1   MENSEKENKITETPMEDENNEEPDWPHIPKFKKHKGRLVSEMRELM----YGYAQ-HRRM 55
           M + E E  + E  M+DEN EE      P        ++++   L+     G A  + R+
Sbjct: 367 MSDFEDEEGVDEPVMDDENEEEDQDDEKPPENPLTEEMLADSLSLLCKTGNGLAHAYVRL 426

Query: 56  DIYKRLLQVELCRNIALIHEENGYD 80
           DI+  L+ + L  ++  I E +G D
Sbjct: 427 DIHDNLMVIALAFSVNEIVEVSGLD 451


>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
          Length = 1682

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 6   KENKITE-TPMEDENNEEPDWPHIPKFKKHKGRLVSEMRELMYGYAQHRRMDIYKRLLQV 64
           K  ++ E +  EDEN EEPD P   K ++   +L+++  +L     + RR++  +R   +
Sbjct: 690 KRKRVKEMSESEDENEEEPDTPSKSKGRRKIRKLLTD-EKLGEETKKARRLEEERRQRLL 748

Query: 65  ELCRNIA 71
           E  +N++
Sbjct: 749 ERTQNLS 755


>SB_34255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/46 (23%), Positives = 25/46 (54%)

Query: 106 NDHLIFQKINRTIRDSMWPNRLGFSYTLRDILRSVNPNQMQQYRQI 151
           N+H+I  K+  + R + W   +G S+    +  ++ PN+ ++ R +
Sbjct: 21  NNHIIIMKVTESPRVTHWHAYVGMSFFEHPLAENLYPNETKRLRGV 66


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 5   EKENKITETPMEDENNEEPDWPHIPKFKKHKGRLVSEMRELMYG----YAQHRR 54
           EK+ +   TP+E+  N E D P +P+  + + ++  E R    G    Y +HRR
Sbjct: 710 EKKTRRARTPVEEPENFEKDVP-LPRVHEEQDQVEKEHRRTPDGTQEPYEKHRR 762


>SB_24188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 246 KTELNHNLFSHIKLSTVYRDKYSMTTDVEFVESIVDIVKDAMICKKGMTKVD 297
           +TELN+ +    K     R+   +T D    E +V ++ + M C +G  +VD
Sbjct: 273 QTELNNTMRFQGKDIVTIREASWLTDDTYSYEEVVRMMGEVMSCLRGEVRVD 324


>SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)
          Length = 825

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 1   MENSEKENKITETPMEDENNEEPDWPHIPKFKKHKGRLVSEMRELMYGYAQHRRMDIYK 59
           +ENS +  K  E P+      E DWP      K K     + +E+++   ++   D+ K
Sbjct: 731 IENSARTQKTEEKPVTRHKKGEDDWPMGINHGKEKQAKEKQTKEVIHTETKNGFTDLEK 789


>SB_4089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 149 RQIDYNDTVFTPQQIRGTNIRNDGPTLNLLDKAILKD 185
           R ++ + T+  P Q RG  + +D   LN+ D A L+D
Sbjct: 17  RSVNSSKTLKKPGQNRGRKVYDDRTELNIADVATLRD 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,798,000
Number of Sequences: 59808
Number of extensions: 389695
Number of successful extensions: 945
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 938
Number of HSP's gapped (non-prelim): 10
length of query: 299
length of database: 16,821,457
effective HSP length: 82
effective length of query: 217
effective length of database: 11,917,201
effective search space: 2586032617
effective search space used: 2586032617
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)