Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000098-TA|BGIBMGA000098-PA|undefined
         (299 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   5.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   7.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   7.6  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 191 PNLKTAQSEITREMRGIIDEKVEKYQMVYFY 221
           P+      EI     G  DE++EK   +Y++
Sbjct: 350 PSFAQFSQEIGLASLGASDEEIEKLSTIYWF 380


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 3   NSEKENKITETPMEDENNEEPDWPHIPKFKKHKGRLVSEMRELMYGYAQHRRMD 56
           + E   +IT  P E E+  +  + HI +      +L+ E  + + G+ +  R D
Sbjct: 353 SEEDLKRITNQPSEGEDISDYKFRHITEITILTVQLIVEFSKRLPGFDELMRED 406


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query: 49  YAQHRRMDIYKRLLQV 64
           YAQH+  ++Y  L+++
Sbjct: 332 YAQHKENELYANLMKI 347


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query: 49  YAQHRRMDIYKRLLQV 64
           YAQH+  ++Y  L+++
Sbjct: 370 YAQHKENELYANLMKI 385


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,118
Number of Sequences: 429
Number of extensions: 3540
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 299
length of database: 140,377
effective HSP length: 57
effective length of query: 242
effective length of database: 115,924
effective search space: 28053608
effective search space used: 28053608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)