Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000098-TA|BGIBMGA000098-PA|undefined
         (299 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea...    35   0.076
At3g01175.1 68416.m00022 expressed protein                             33   0.23 
At5g51930.1 68418.m06442 glucose-methanol-choline (GMC) oxidored...    29   3.8  
At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative...    29   3.8  
At4g08336.1 68417.m01377 hypothetical protein                          29   3.8  
At4g02750.1 68417.m00375 pentatricopeptide (PPR) repeat-containi...    29   3.8  
At1g03290.1 68414.m00307 expressed protein ESTs gb|H36966, gb|R6...    29   5.0  
At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K) ne...    28   8.7  
At5g14640.1 68418.m01715 protein kinase family protein similar t...    28   8.7  
At3g16510.1 68416.m02107 C2 domain-containing protein contains s...    28   8.7  

>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
           similarity to myosin heavy chain [Rana catesbeiana]
           GI:4249699; contains Pfam profile PF00787: PX domain
          Length = 755

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 167 NIRNDGPTLNLLDKAILKDKYRVIPNLKTAQSEITREMRGIIDEKVEKYQMV 218
           N   +   L +  KA LK   + + +L+T QS++ +E+ GI+ EK+E  ++V
Sbjct: 549 NFHKEHEELEVKAKAELKVLVKEVKSLRTTQSDLRQELSGIMKEKLEMERIV 600


>At3g01175.1 68416.m00022 expressed protein 
          Length = 401

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 161 QQIRGT--NIRNDGPTLNLLDKAILKDKYRVIPNLKTAQSEITREMRGIIDEKVEKYQMV 218
           Q+I+ T  N+     T N +       KY+V  +LK     I+ +   I++E+ +     
Sbjct: 94  QEIKNTLDNLELSTSTHNPVPAFSFSFKYQVDSHLKV---RISMQKGKILEEEEDVDDFF 150

Query: 219 YFYKXXXXXXXXXXXXXXEEHGIDVLPKTELNHNLFSHIKLSTVYR-DKYSMTTDVEFVE 277
           Y Y               EEH +D+     +  NL   I+   +++ D+ S+T D E  E
Sbjct: 151 YEYDQEDVVELLDAKEVEEEHDVDIFDGVNMEKNLEFEIQTMPIHQEDEASLTNDDEEEE 210

Query: 278 SI 279
            +
Sbjct: 211 IV 212


>At5g51930.1 68418.m06442 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 582

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 107 DHLIFQKINRTIRDSMWPNRLGFSYTLRDILRSVNPNQMQQYRQIDYNDTVFTPQ 161
           DH+   KI  TI D     R G  +T  ++L   NPN++  Y     +  +FT +
Sbjct: 219 DHIYGTKIGGTIFD-----RAGHRHTAANLLEYANPNRIVVYLHASVHKVLFTTE 268


>At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative
           strong similarity to gi:4467359
          Length = 1116

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 157 VFTPQQIRGTNIRNDGPTLNLLDKAILKDKYRVIPNLKTAQSEITREMRGIIDEKVEK 214
           +F+P    G+N+++DG  L+  D  I K   R+IP+ K   + + R+     DE+ EK
Sbjct: 192 LFSPTS--GSNLQDDGSQLSADDNKIFK---RLIPSPKVRDALLFRKSADKEDEECEK 244


>At4g08336.1 68417.m01377 hypothetical protein
          Length = 157

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 168 IRNDGPTLNLLDKAILKDKYRVIPNLKTAQSEITREMRGIIDEKVEKYQMVY 219
           +RND  T  L+D+A+L +    I  L     +I +E++ +  ++ E  +MVY
Sbjct: 59  LRNDDHTFKLVDEALLNE----IETLTAKTRDIEQELKDLRGQRSEFEKMVY 106


>At4g02750.1 68417.m00375 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 781

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 31  FKKHKGRLVSEMRELMYGYAQHRRMDIYKRLLQVELCRNIA 71
           F K   R       ++ GY Q  RM++ K L  V  CRN++
Sbjct: 304 FDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVS 344


>At1g03290.1 68414.m00307 expressed protein ESTs gb|H36966,
           gb|R65511, gb|T42324 and gb|T20569 come from this gene
          Length = 571

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 239 HGIDVLPKTELNHNLFSHIKLSTVYRDKYSMTTDVEFVESIVDIVKDAMICKKGM 293
           HG   L     N +LFS     T   D +S +T V  V+ + DI++DA   KK +
Sbjct: 249 HGSTNLVDETSNRSLFSE-NGDTEIGDAFSTSTHVCSVDQLEDIIEDAKSNKKNL 302


>At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K)
           nearly identical to gi:4467359
          Length = 1121

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 165 GTNIRNDGPTLNLLDKAILKDKYRVIPNLKTAQSEITREMRGIIDEKVEK 214
           GTN+++DG  L   D  I K   ++IP+ K   + + R+     DE+ EK
Sbjct: 200 GTNVQDDGSQLPAEDNKIFK---KLIPSPKVRDALMFRKSADKDDEESEK 246


>At5g14640.1 68418.m01715 protein kinase family protein similar to
           glycogen synthase kinase-3 homolog MsK-3 SP:P51139 from
           [Medicago sativa]; contains Pfam profile PF00069:
           Protein kinase domain
          Length = 410

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 47  YGYAQHRRMDIYKRLLQVELCRNIALIHEENGYDCMDVENRPRGCAVFKHAYR 99
           Y  A  R   IY +L   ++CR +A IH   G    D+  +P+   V  H ++
Sbjct: 163 YSRANQRMPIIYVKLYTYQICRALAYIHGGVGVCHRDI--KPQNLLVNPHTHQ 213


>At3g16510.1 68416.m02107 C2 domain-containing protein contains
          similarity to shock protein SRC2 [Glycine max]
          gi|2055230|dbj|BAA19769 ; contains Pfam profile
          PF00168:C2 domain
          Length = 360

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 2  ENSEKENKITETPMEDENNEEPDWPHIPKFK-----KHKGRL 38
          ++S K +K  +TP++     EP W H  KF       H+GRL
Sbjct: 36 DDSRKNHK-EKTPIDRTGESEPTWNHTVKFSVDQRLAHEGRL 76


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,783,966
Number of Sequences: 28952
Number of extensions: 270683
Number of successful extensions: 671
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 10
length of query: 299
length of database: 12,070,560
effective HSP length: 81
effective length of query: 218
effective length of database: 9,725,448
effective search space: 2120147664
effective search space used: 2120147664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)