GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000098-TA|BGIBMGA000098-PA|undefined
         (299 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0315 - 2111095-2111241,2111496-2111579,2111803-2111883,211...    31   0.85 
04_04_0217 - 23693124-23693535,23693965-23694052,23694428-236945...    29   3.4  
01_06_0216 + 27618116-27618548,27618960-27619042,27619169-276192...    29   6.0  

>02_01_0315 -
           2111095-2111241,2111496-2111579,2111803-2111883,
           2112133-2112310,2112447-2112623,2112688-2112734,
           2112845-2112901,2113339-2113437,2113696-2113818,
           2113895-2114017,2114241-2114264,2115096-2115209,
           2115315-2115503,2115691-2115857,2116846-2116930,
           2117698-2117778,2118239-2118424,2119266-2119314,
           2119777-2119810,2120087-2120153,2120198-2120419
          Length = 777

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 137 LRSVNPNQMQQYRQIDYNDTVFTPQQIRGTNIRND-GPTLNL 177
           ++  N N M+ Y      DT FT Q I  TN+  D GPT+ L
Sbjct: 397 MQQQNHNHMKGYNGSQLWDTAFTVQAILATNLIEDFGPTIKL 438


>04_04_0217 -
           23693124-23693535,23693965-23694052,23694428-23694503,
           23694729-23694787,23694853-23694934,23695533-23696577,
           23696700-23696998
          Length = 686

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 245 PKTELNHNLFSHIKLSTVYRDKYSMTTDV 273
           P T  +H L +H +   +YR+KY  T +V
Sbjct: 612 PYTACHHQLLAHAETVRLYREKYQFTEEV 640


>01_06_0216 +
           27618116-27618548,27618960-27619042,27619169-27619225,
           27619255-27619407,27619777-27619872,27620103-27620183,
           27620184-27620254,27620343-27620385,27620502-27620582,
           27620684-27620743,27621018-27621083,27621358-27621455,
           27621794-27621842,27621933-27621977,27622845-27623369
          Length = 646

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 9/37 (24%), Positives = 21/37 (56%)

Query: 243 VLPKTELNHNLFSHIKLSTVYRDKYSMTTDVEFVESI 279
           ++P  ++  N F++ K+ + +   YS+ TD   + S+
Sbjct: 457 MVPDNDIGKNSFNYFKVKSAFSKAYSVLTDANLITSL 493


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,844,977
Number of Sequences: 37544
Number of extensions: 300356
Number of successful extensions: 705
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 3
length of query: 299
length of database: 14,793,348
effective HSP length: 82
effective length of query: 217
effective length of database: 11,714,740
effective search space: 2542098580
effective search space used: 2542098580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)