GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000098-TA|BGIBMGA000098-PA|undefined
         (299 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              23   7.9  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   7.9  
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     23   7.9  

>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 7/53 (13%), Positives = 26/53 (49%)

Query: 2   ENSEKENKITETPMEDENNEEPDWPHIPKFKKHKGRLVSEMRELMYGYAQHRR 54
           +  +++ +  +   + + N++ +W    + ++H+ R   + + +     QH+R
Sbjct: 237 QQQQQQQQQQQQQQQQQRNQQREWQQQQQQQQHQQREQQQQQRVQQQNQQHQR 289


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 30  KFKKHKGRLVSEMRELMYGYAQHRRMDIYKRLLQVELCR---NIALIHEEN--GYD 80
           + K+HK ++ S+ +EL   Y Q  ++      L++E+ +    I  +  EN  GYD
Sbjct: 872 QIKQHKEKMNSQSKELKAKYHQRDKLLKQNDELKLEIKKKENEITKVRNENKDGYD 927


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 138 RSVNPNQMQQYRQIDYNDTVFTPQQIRGTNIRND 171
           + + PN+ QQ + +  NDT      +R   IR +
Sbjct: 105 KKIKPNKEQQVKTVRENDTSSFTFMVRQPEIRGN 138


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 297,274
Number of Sequences: 2123
Number of extensions: 11524
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 3
length of query: 299
length of database: 516,269
effective HSP length: 64
effective length of query: 235
effective length of database: 380,397
effective search space: 89393295
effective search space used: 89393295
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)