GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000098-TA|BGIBMGA000098-PA|undefined
         (299 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC100827-1|AAI00828.1|  727|Homo sapiens synaptic vesicle glycop...    31   6.5  
BC100826-1|AAI00827.1|  727|Homo sapiens synaptic vesicle glycop...    31   6.5  
BC100825-1|AAI00826.1|  727|Homo sapiens synaptic vesicle glycop...    31   6.5  
BC100824-1|AAI00825.1|  727|Homo sapiens synaptic vesicle glycop...    31   6.5  

>BC100827-1|AAI00828.1|  727|Homo sapiens synaptic vesicle
           glycoprotein 2C protein.
          Length = 727

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 20/77 (25%), Positives = 36/77 (46%)

Query: 3   NSEKENKITETPMEDENNEEPDWPHIPKFKKHKGRLVSEMRELMYGYAQHRRMDIYKRLL 62
           + E  ++ TE   ED+   E ++  IP   + K  +VS  +     Y   R ++  +R  
Sbjct: 71  DDEGSSEATEGHDEDDEIYEGEYQGIPSMNQAKDSIVSVGQPKGDEYKDRRELESERRAD 130

Query: 63  QVELCRNIALIHEENGY 79
           + EL +   LI +E G+
Sbjct: 131 EEELAQQYELIIQECGH 147


>BC100826-1|AAI00827.1|  727|Homo sapiens synaptic vesicle
           glycoprotein 2C protein.
          Length = 727

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 20/77 (25%), Positives = 36/77 (46%)

Query: 3   NSEKENKITETPMEDENNEEPDWPHIPKFKKHKGRLVSEMRELMYGYAQHRRMDIYKRLL 62
           + E  ++ TE   ED+   E ++  IP   + K  +VS  +     Y   R ++  +R  
Sbjct: 71  DDEGSSEATEGHDEDDEIYEGEYQGIPSMNQAKDSIVSVGQPKGDEYKDRRELESERRAD 130

Query: 63  QVELCRNIALIHEENGY 79
           + EL +   LI +E G+
Sbjct: 131 EEELAQQYELIIQECGH 147


>BC100825-1|AAI00826.1|  727|Homo sapiens synaptic vesicle
           glycoprotein 2C protein.
          Length = 727

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 20/77 (25%), Positives = 36/77 (46%)

Query: 3   NSEKENKITETPMEDENNEEPDWPHIPKFKKHKGRLVSEMRELMYGYAQHRRMDIYKRLL 62
           + E  ++ TE   ED+   E ++  IP   + K  +VS  +     Y   R ++  +R  
Sbjct: 71  DDEGSSEATEGHDEDDEIYEGEYQGIPSMNQAKDSIVSVGQPKGDEYKDRRELESERRAD 130

Query: 63  QVELCRNIALIHEENGY 79
           + EL +   LI +E G+
Sbjct: 131 EEELAQQYELIIQECGH 147


>BC100824-1|AAI00825.1|  727|Homo sapiens synaptic vesicle
           glycoprotein 2C protein.
          Length = 727

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 20/77 (25%), Positives = 36/77 (46%)

Query: 3   NSEKENKITETPMEDENNEEPDWPHIPKFKKHKGRLVSEMRELMYGYAQHRRMDIYKRLL 62
           + E  ++ TE   ED+   E ++  IP   + K  +VS  +     Y   R ++  +R  
Sbjct: 71  DDEGSSEATEGHDEDDEIYEGEYQGIPSMNQAKDSIVSVGQPKGDEYKDRRELESERRAD 130

Query: 63  QVELCRNIALIHEENGY 79
           + EL +   LI +E G+
Sbjct: 131 EEELAQQYELIIQECGH 147


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,040,599
Number of Sequences: 224733
Number of extensions: 1445350
Number of successful extensions: 3355
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3351
Number of HSP's gapped (non-prelim): 4
length of query: 299
length of database: 73,234,838
effective HSP length: 90
effective length of query: 209
effective length of database: 53,008,868
effective search space: 11078853412
effective search space used: 11078853412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)