GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000098-TA|BGIBMGA000098-PA|undefined
         (299 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003756-1|AAO41435.1|  674|Drosophila melanogaster RE71343p pro...    31   2.5  
AY089551-1|AAL90289.1|  975|Drosophila melanogaster LD28793p pro...    31   2.5  
AE014297-4212|AAF56769.1|  975|Drosophila melanogaster CG4849-PA...    31   2.5  

>BT003756-1|AAO41435.1|  674|Drosophila melanogaster RE71343p
           protein.
          Length = 674

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 136 ILRSVNPN-QMQQYRQIDYNDTVFTPQQIRGTNIRNDGPTLNLLD 179
           ++R  +P  +  + RQ+ Y DT+FT Q+ RG +I+    TL L D
Sbjct: 151 LIRQTHPQFETMEERQLRYTDTLFTEQE-RGCSIKATPVTLVLQD 194


>AY089551-1|AAL90289.1|  975|Drosophila melanogaster LD28793p
           protein.
          Length = 975

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 136 ILRSVNPN-QMQQYRQIDYNDTVFTPQQIRGTNIRNDGPTLNLLD 179
           ++R  +P  +  + RQ+ Y DT+FT Q+ RG +I+    TL L D
Sbjct: 151 LIRQTHPQFETMEERQLRYTDTLFTEQE-RGCSIKATPVTLVLQD 194


>AE014297-4212|AAF56769.1|  975|Drosophila melanogaster CG4849-PA
           protein.
          Length = 975

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 136 ILRSVNPN-QMQQYRQIDYNDTVFTPQQIRGTNIRNDGPTLNLLD 179
           ++R  +P  +  + RQ+ Y DT+FT Q+ RG +I+    TL L D
Sbjct: 151 LIRQTHPQFETMEERQLRYTDTLFTEQE-RGCSIKATPVTLVLQD 194


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,085,257
Number of Sequences: 52641
Number of extensions: 565724
Number of successful extensions: 1287
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1287
Number of HSP's gapped (non-prelim): 3
length of query: 299
length of database: 24,830,863
effective HSP length: 85
effective length of query: 214
effective length of database: 20,356,378
effective search space: 4356264892
effective search space used: 4356264892
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)