Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000097-TA|BGIBMGA000097-PA|IPR001300|Peptidase C2,
calpain, IPR002048|Calcium-binding EF-hand, IPR000169|Peptidase,
cysteine peptidase active site
         (940 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    26   1.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   4.2  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   7.4  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 795 LNQPQPYANAQELQGQGFSKDVCRSMIAMLDKDGSGGLGFEEFKSLWI 842
           LN P    +  E+Q QG SK+   +     D D S G+ F+   S+++
Sbjct: 425 LNYPGITVSNIEVQSQGSSKNTFNTFWQQSDVDLSRGMDFQPRGSVFV 472


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 145 VTLTQERDVPPPKKSSIVVQHK 166
           V L  +R++P PK+SS ++  K
Sbjct: 69  VALPPKREIPSPKRSSPILAEK 90


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 79  RPKVADHNTPDEPKR 93
           RP+  DH   +EPKR
Sbjct: 317 RPRATDHQRRNEPKR 331


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,393
Number of Sequences: 317
Number of extensions: 11215
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 4
length of query: 940
length of database: 114,650
effective HSP length: 63
effective length of query: 877
effective length of database: 94,679
effective search space: 83033483
effective search space used: 83033483
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)