GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000097-TA|BGIBMGA000097-PA|IPR001300|Peptidase C2,
calpain, IPR002048|Calcium-binding EF-hand, IPR000169|Peptidase,
cysteine peptidase active site
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    36   0.020
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    35   0.046
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    33   0.19 
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    32   0.43 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    31   0.75 
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    30   1.7  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    29   2.3  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    29   2.3  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    29   3.0  
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    29   4.0  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    29   4.0  
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    28   5.3  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    28   7.0  
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    28   7.0  

>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 851 FRLYDVERRGAVPASHLRDALHSAGYTVN-AHVLNVLAHRYGTTDGYIQFDDFI 903
           F+L+D ++  A+    LR A+ + G+    + VL +L     T  GY+Q +DF+
Sbjct: 43  FKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFV 96


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 35.1 bits (77), Expect = 0.046
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 848 RAVFRLYDVERRGAVPASHLRDALHSAGYTVNAHVLNVLAHRYGTTDGYIQFDDFIMCAV 907
           +  F LYD+++ G +P SH+   L S G  V    L  L++  G      +F  F+   +
Sbjct: 12  KEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNELGDAIDEKKFMSFVSNKL 71

Query: 908 R 908
           R
Sbjct: 72  R 72


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 809 GQGFSKDVCRSMIAMLDKDGSGGLGFEEFKSLWI----DLRN---WRAVFRLYDVERRGA 861
           GQ  +    + MI  +D DG+G + F EF ++      D  N    R  F+++D +  G 
Sbjct: 42  GQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGY 101

Query: 862 VPASHLRDALHSAGYTVN-AHVLNVLAHRYGTTDGYIQFDDF 902
           +    L   L S G  ++   V +++       DG I +++F
Sbjct: 102 ITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEF 143


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 10/137 (7%)

Query: 31  STPRNVTNKLLKSETEMQXXXXXXXXXXXXXHNRAMSGFFTKLLDGFRRPKVADHNTPDE 90
           S  RNV    LK+E                   R+ S    +LL+ +R  KV  H +  +
Sbjct: 14  SAVRNVAKSYLKAEASSITAKQLYDASKITSSKRSTSDLHVQLLEKYRNGKV-KHASQIK 72

Query: 91  PKRKSHKFWKSTKLVDTKAGAEDAVIGIKKMTITEHCHVPSNAKALKRPFDSPKVTLTQE 150
               S K  K T L ++    +DA  G+K +          ++K +K P   P +   ++
Sbjct: 73  ELGLSSKDTKRTLLGNSLDVQKDA-SGVKHLQ-------EQSSKEIKNPISQP-ILPNKK 123

Query: 151 RDVPPPKKSSIVVQHKD 167
            ++ P K S+I    KD
Sbjct: 124 DEISPAKPSAIDSSIKD 140


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 3/99 (3%)

Query: 757  NYWEQSCLEQILCALCTPICKELGVDLQQAQNQPEQVHLNQPQPYANAQELQGQGFSKDV 816
            N  +  C+EQ L         E    ++    +P ++H+N+   ++  +E +     +  
Sbjct: 1889 NSKDDLCIEQYLMKSERSFFHERRA-IKLGLQKPNKLHVNELSSHSGTEESESLSNGQTS 1947

Query: 817  CRSMIAMLDKDGSGGLGFEEFKSLWIDLRNWRAVFRLYD 855
               +IAM D+     LG ++FK++   L+ +  +F++YD
Sbjct: 1948 YDDIIAMTDESNYTQLGDDDFKTIH-GLKKF-MLFKIYD 1984


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 16  TDVQYLRTHSLENNASTPRNV-TNKLLKSETEMQ 48
           +D+Q  RT S+E N S P  V TN +   +TEMQ
Sbjct: 388 SDIQNKRTKSIEENNSLPPIVSTNGITDGDTEMQ 421


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 854 YDVERRGAVPASHLRDALHSAGYTVNAHVLNVLAHRYGTTDGYIQFDDFIMCAVRLKTMI 913
           Y + ++ A+    +  A +  GY V+  ++ V+  ++      IQ   F++C +    + 
Sbjct: 395 YHILQKNAIGNLIIAVAGYIPGYWVSVVLIEVMGRKW------IQIQGFLICCLLFGVLA 448

Query: 914 DTFNSRSSGGDYATFSLEEW 933
            T+ + S+GG +A  +L ++
Sbjct: 449 GTWETISTGGRFACVALAQF 468


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 124 TEHCHVPSNAKALKRPFDSPKVTLTQERDVPPPKKSSIVVQHKDYQLKLPPYYKG 178
           TE   + SN    +RP  S K  L  +++ PPP   ++V+  K  ++  P   +G
Sbjct: 217 TEQSLITSNTSKHRRPNKSLKDLLGIQKEKPPPPPVAVVIDPKLARILRPHQIEG 271


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 774 PICKELGVDLQQAQNQPEQVHLNQPQP 800
           PIC E  V++++A+     VH N+P P
Sbjct: 171 PICSECFVEIRRAEPHLPTVHANEPTP 197


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 851 FRLYDVERRGAVPASHLRDALHSAGYTVNAHVLNVLAHRYGTTDGYIQFDDFI 903
           F+++D +  G +    LR  L S G  ++   ++ L       DG + + DF+
Sbjct: 83  FQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKDGMVNYHDFV 135


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 16  TDVQYLRTHSLENNASTPRNVTNKLLKS 43
           +D   LRTHSL+ N ++P ++++   KS
Sbjct: 583 SDYDLLRTHSLDENVNSPTSISSPSSKS 610


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 818 RSMIAMLDKDGSGGLGFEEFKSLWIDL 844
           +   A+LDKDG G +G E+ K++   L
Sbjct: 51  KEAFALLDKDGDGNIGREDVKTMLTSL 77


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 669 DEEGEFLLRVFSEKDNNMAENDEDIGMGDVDDRVKELAPDPEPADPVREFFTRLAGSDGE 728
           DE+ ++++  F E +      DE+     +  R +E   + E A    + F     SDGE
Sbjct: 361 DEQRDYVMETFHEDEELEDSEDEEFARQQLLSRKEEEEEEDEEASDFEDSFADF--SDGE 418

Query: 729 VD 730
            D
Sbjct: 419 AD 420


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 813 SKDVCRSMIAMLDKDGSGGLGFEEF-KSLWI------DLRNWRAVFRLYDVERRGAVPAS 865
           S  +   + +++D+DG G + F+EF  SL +           +  F++YD++R G +   
Sbjct: 54  SNPLASRLFSVVDEDGGGDVDFQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNG 113

Query: 866 HL 867
            L
Sbjct: 114 EL 115


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,760,838
Number of Sequences: 5004
Number of extensions: 218523
Number of successful extensions: 482
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 19
length of query: 940
length of database: 2,362,478
effective HSP length: 79
effective length of query: 861
effective length of database: 1,967,162
effective search space: 1693726482
effective search space used: 1693726482
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)