Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000096-TA|BGIBMGA000096-PA|undefined
         (69 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    19   6.3  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    19   6.3  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    19   6.3  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    18   8.4  

>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
          oxygenase protein.
          Length = 228

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 6/19 (31%), Positives = 13/19 (68%)

Query: 46 QKKEVEQKRFLPSIKNYKV 64
          ++KE+ +K    ++K YK+
Sbjct: 57 EQKELAEKEEAETLKRYKL 75


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 6/19 (31%), Positives = 13/19 (68%)

Query: 46  QKKEVEQKRFLPSIKNYKV 64
           ++KE+ +K    ++K YK+
Sbjct: 217 EQKELAEKEEAETLKRYKL 235


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 6/19 (31%), Positives = 13/19 (68%)

Query: 46  QKKEVEQKRFLPSIKNYKV 64
           ++KE+ +K    ++K YK+
Sbjct: 217 EQKELAEKEEAETLKRYKL 235


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 6/27 (22%), Positives = 16/27 (59%)

Query: 41  INEVFQKKEVEQKRFLPSIKNYKVVSI 67
           I+++FQ+ +    R+  +  NY  +++
Sbjct: 406 IDDIFQEYKATLPRYTENQLNYPGITV 432


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.138    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,828
Number of Sequences: 317
Number of extensions: 225
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 69
length of database: 114,650
effective HSP length: 44
effective length of query: 25
effective length of database: 100,702
effective search space:  2517550
effective search space used:  2517550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)