Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000096-TA|BGIBMGA000096-PA|undefined
         (69 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    24   2.8  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    23   5.0  

>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 39  NIINEVFQKKEVEQKRFLP-SIKN 61
           NI+  V  K ++EQK  LP ++KN
Sbjct: 204 NIVGRVADKLQLEQKSVLPNAVKN 227


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 35  QALGNIINEVFQKKEVEQKRFLPS-IKNYKVVSII 68
           QAL  IIN V   + +++K F    IK ++ VS++
Sbjct: 444 QALDEIINSVKSSQNMKEKGFYSDVIKLHEEVSLL 478


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.138    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,275
Number of Sequences: 5004
Number of extensions: 4533
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 69
length of database: 2,362,478
effective HSP length: 49
effective length of query: 20
effective length of database: 2,117,282
effective search space: 42345640
effective search space used: 42345640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)