GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000096-TA|BGIBMGA000096-PA|undefined
         (69 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   1.4  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    19   5.5  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    19   5.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   7.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     18   9.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    18   9.7  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 32  YGAQALGNIINEVFQKKEVEQKRF 55
           Y A  L  I+NE+F + +   +RF
Sbjct: 289 YSASELVKILNELFARFDQLSERF 312


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6
          variant 2 precursor protein.
          Length = 94

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 42 NEVFQKKEVEQKRFLPSI 59
          NE+F + +   +RF P++
Sbjct: 40 NEIFSRCDGRCQRFCPNV 57


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6
          variant 1 precursor protein.
          Length = 92

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 42 NEVFQKKEVEQKRFLPSI 59
          NE+F + +   +RF P++
Sbjct: 40 NEIFSRCDGRCQRFCPNV 57


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 50  VEQKRFLPSIKNYKVVSI 67
           V ++R L ++ NY +VS+
Sbjct: 211 VVRERALQTVTNYFIVSL 228


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/10 (50%), Positives = 9/10 (90%)

Query: 53  KRFLPSIKNY 62
           +R+LP +KN+
Sbjct: 447 RRYLPVLKNF 456


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 53  KRFLPSIKNYKVVSIIA 69
           K +LP  +NYK +++ A
Sbjct: 441 KTWLPVNENYKSLNLAA 457


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.138    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394
Number of Sequences: 429
Number of extensions: 220
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 69
length of database: 140,377
effective HSP length: 45
effective length of query: 24
effective length of database: 121,072
effective search space:  2905728
effective search space used:  2905728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)