Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000095-TA|BGIBMGA000095-PA|undefined
         (114 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.00 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.00 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   1.00 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    20   5.3  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 1.00
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 17  HRTANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDASFSGVKLYPA 68
           + T +A      F N   G  S    +G+ S + KL  ED  S     L+P+
Sbjct: 129 NNTPSATNNNTNFNNNSNGASS----VGSSSPFDKLIEEDSRSNEDTSLHPS 176


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 1.00
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 17  HRTANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDASFSGVKLYPA 68
           + T +A      F N   G  S    +G+ S + KL  ED  S     L+P+
Sbjct: 77  NNTPSATNNNTNFNNNSNGASS----VGSSSPFDKLIEEDSRSNEDTSLHPS 124


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 1.00
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 17  HRTANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDASFSGVKLYPA 68
           + T +A      F N   G  S    +G+ S + KL  ED  S     L+P+
Sbjct: 260 NNTPSATNNNTNFNNNSNGASS----VGSSSPFDKLIEEDSRSNEDTSLHPS 307


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 10/40 (25%), Positives = 14/40 (35%)

Query: 6   PKNFKANGWGWHRTANAAAAVKGFLNKERGEGSSEPLIGN 45
           P      G  W   A AAA    +       G S+P + +
Sbjct: 98  PARDSRKGLFWSPAATAAATATEYKYSAAAPGPSDPSVSS 137


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.133    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,875
Number of Sequences: 317
Number of extensions: 633
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 114
length of database: 114,650
effective HSP length: 49
effective length of query: 65
effective length of database: 99,117
effective search space:  6442605
effective search space used:  6442605
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.1 bits)
S2: 38 (19.4 bits)