Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000095-TA|BGIBMGA000095-PA|undefined
         (114 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.2  
SB_15857| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         26   8.5  

>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1289

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 10  KANGWGWHRTANAAAAVKGFLNKERGEGSSEPLIGN 45
           K +   W     AA ++ G + +ERGE SS   + N
Sbjct: 712 KTSAESWAEQTTAALSLDGSVTRERGEASSTQFLSN 747


>SB_15857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 16  WHR-TANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDASFSGVKLYPALP 70
           +H+  A    ++   LN    E SS P     S  PK   +DD+S  G  + P+LP
Sbjct: 365 YHKHAAEVMQSLVSTLNDRVTEASSRPRSERPSFTPKFNDDDDSSSGGGSM-PSLP 419


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 44  GNGSLYPKLPSEDDASFSGVKL 65
           G G +YP  P + D  FS V+L
Sbjct: 274 GTGDVYPNWPKDADIDFSKVEL 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.133    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,261,624
Number of Sequences: 59808
Number of extensions: 105139
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 3
length of query: 114
length of database: 16,821,457
effective HSP length: 73
effective length of query: 41
effective length of database: 12,455,473
effective search space: 510674393
effective search space used: 510674393
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)