GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000095-TA|BGIBMGA000095-PA|undefined
         (114 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   3.9  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   5.2  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 35  GEGSSEPLIGNGSLYPKLPSEDDASFSGVKLY 66
           G  +   L+  GS++  LP+++    SG+ L+
Sbjct: 155 GSDAMHYLLSKGSIFEALPNDNYLQISGIPLF 186


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 557

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 30 LNKERGEGSSEPLIGNGSLYPKLPSEDDAS 59
          L  ER + + E ++   +  P++PS DDAS
Sbjct: 26 LGAEREKEAVERIVQEENQNPEVPSNDDAS 55


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.133    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 452,888
Number of Sequences: 5004
Number of extensions: 14032
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 3
length of query: 114
length of database: 2,362,478
effective HSP length: 64
effective length of query: 50
effective length of database: 2,042,222
effective search space: 102111100
effective search space used: 102111100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 48 (23.4 bits)