BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000095-TA|BGIBMGA000095-PA|undefined (114 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 31 0.29 12_02_0633 + 21402847-21402862,21403143-21404975,21405052-214051... 27 3.6 10_08_0468 - 18146369-18146701,18147267-18147467,18147525-181477... 27 3.6 03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874... 27 3.6 04_04_1391 + 33195508-33195903,33197506-33197592,33197678-33198196 26 8.2 >03_05_0936 - 28955486-28955683,28956320-28956424,28956550-28956693, 28957078-28957356,28957480-28957587,28958288-28958567, 28958724-28960029,28961301-28962342 Length = 1153 Score = 30.7 bits (66), Expect = 0.29 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 17 HRTANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDASFSGVKLYP 67 +R A A AA++G LN RG+ S+ P + PK E D S +G P Sbjct: 15 NRFAKAEAALRGELNG-RGDASNGPTVQRRVAEPKEDDEQDGSEAGSNAGP 64 >12_02_0633 + 21402847-21402862,21403143-21404975,21405052-21405170, 21405288-21405722 Length = 800 Score = 27.1 bits (57), Expect = 3.6 Identities = 14/40 (35%), Positives = 20/40 (50%) Query: 17 HRTANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSED 56 H T A A K K+R S + L+ N ++P+ PS D Sbjct: 731 HTTPQAPAPAKRKNTKKRKVRSLQSLMRNAPVHPEAPSSD 770 >10_08_0468 - 18146369-18146701,18147267-18147467,18147525-18147773, 18148058-18148090 Length = 271 Score = 27.1 bits (57), Expect = 3.6 Identities = 13/26 (50%), Positives = 15/26 (57%) Query: 15 GWHRTANAAAAVKGFLNKERGEGSSE 40 GW R A AAAAV K RG+ +E Sbjct: 214 GWRRRAEAAAAVLALEAKGRGDVEAE 239 >03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324, 8746665-8746893,8747314-8747420,8747560-8747622, 8747883-8747983,8748996-8749090,8749330-8749350, 8749987-8750082,8750188-8750308,8750415-8750570, 8750679-8750869,8751207-8751478,8751853-8751954, 8752006-8752038,8752132-8752308,8752397-8752466, 8752512-8752585,8752667-8752908,8752983-8753129, 8753526-8753751,8753893-8753970,8754378-8754521, 8754829-8755008,8755335-8755394,8755484-8755523, 8758653-8759137 Length = 1294 Score = 27.1 bits (57), Expect = 3.6 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%) Query: 16 WHRTANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDASFSG 62 W A A VK FL G G+ P + + PS+DD SG Sbjct: 957 WENNAPAVDKVKDFL---AGAGTDAPDVDDEEYMNSRPSDDDGRSSG 1000 >04_04_1391 + 33195508-33195903,33197506-33197592,33197678-33198196 Length = 333 Score = 25.8 bits (54), Expect = 8.2 Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 22 AAAAVKGFLNKERGEGSSEPLIGNGS 47 AA + G +NK G PLIG+G+ Sbjct: 217 AATSTGGLMNKMTGRIGDSPLIGSGT 242 Database: rice Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.313 0.133 0.410 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,091,453 Number of Sequences: 37544 Number of extensions: 105719 Number of successful extensions: 170 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 167 Number of HSP's gapped (non-prelim): 5 length of query: 114 length of database: 14,793,348 effective HSP length: 73 effective length of query: 41 effective length of database: 12,052,636 effective search space: 494158076 effective search space used: 494158076 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (21.9 bits) S2: 54 (25.8 bits)
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