GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000095-TA|BGIBMGA000095-PA|undefined
         (114 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566...    31   0.29 
12_02_0633 + 21402847-21402862,21403143-21404975,21405052-214051...    27   3.6  
10_08_0468 - 18146369-18146701,18147267-18147467,18147525-181477...    27   3.6  
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874...    27   3.6  
04_04_1391 + 33195508-33195903,33197506-33197592,33197678-33198196     26   8.2  

>03_05_0936 -
          28955486-28955683,28956320-28956424,28956550-28956693,
          28957078-28957356,28957480-28957587,28958288-28958567,
          28958724-28960029,28961301-28962342
          Length = 1153

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 17 HRTANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDASFSGVKLYP 67
          +R A A AA++G LN  RG+ S+ P +      PK   E D S +G    P
Sbjct: 15 NRFAKAEAALRGELNG-RGDASNGPTVQRRVAEPKEDDEQDGSEAGSNAGP 64


>12_02_0633 +
           21402847-21402862,21403143-21404975,21405052-21405170,
           21405288-21405722
          Length = 800

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 17  HRTANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSED 56
           H T  A A  K    K+R   S + L+ N  ++P+ PS D
Sbjct: 731 HTTPQAPAPAKRKNTKKRKVRSLQSLMRNAPVHPEAPSSD 770


>10_08_0468 -
           18146369-18146701,18147267-18147467,18147525-18147773,
           18148058-18148090
          Length = 271

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 15  GWHRTANAAAAVKGFLNKERGEGSSE 40
           GW R A AAAAV     K RG+  +E
Sbjct: 214 GWRRRAEAAAAVLALEAKGRGDVEAE 239


>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
            8746665-8746893,8747314-8747420,8747560-8747622,
            8747883-8747983,8748996-8749090,8749330-8749350,
            8749987-8750082,8750188-8750308,8750415-8750570,
            8750679-8750869,8751207-8751478,8751853-8751954,
            8752006-8752038,8752132-8752308,8752397-8752466,
            8752512-8752585,8752667-8752908,8752983-8753129,
            8753526-8753751,8753893-8753970,8754378-8754521,
            8754829-8755008,8755335-8755394,8755484-8755523,
            8758653-8759137
          Length = 1294

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 16   WHRTANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDASFSG 62
            W   A A   VK FL    G G+  P + +       PS+DD   SG
Sbjct: 957  WENNAPAVDKVKDFL---AGAGTDAPDVDDEEYMNSRPSDDDGRSSG 1000


>04_04_1391 + 33195508-33195903,33197506-33197592,33197678-33198196
          Length = 333

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 22  AAAAVKGFLNKERGEGSSEPLIGNGS 47
           AA +  G +NK  G     PLIG+G+
Sbjct: 217 AATSTGGLMNKMTGRIGDSPLIGSGT 242


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.133    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,453
Number of Sequences: 37544
Number of extensions: 105719
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 5
length of query: 114
length of database: 14,793,348
effective HSP length: 73
effective length of query: 41
effective length of database: 12,052,636
effective search space: 494158076
effective search space used: 494158076
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)