GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000095-TA|BGIBMGA000095-PA|undefined
         (114 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF062404-1|AAD04331.2|  925|Drosophila melanogaster calpain prot...    31   0.36 
AE014296-1773|AAF50189.2|  925|Drosophila melanogaster CG8107-PA...    31   0.36 
M20230-1|AAA28721.1| 1501|Drosophila melanogaster protein ( D.me...    29   1.5  
J03131-1|AAA28718.1| 1501|Drosophila melanogaster protein ( D.me...    29   1.5  
AE014134-1263|AAF52504.3| 1501|Drosophila melanogaster CG5125-PB...    29   1.5  

>AF062404-1|AAD04331.2|  925|Drosophila melanogaster calpain
          protein.
          Length = 925

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 5  YPKNFKANGWGWHRTANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDASFSGV 63
          YPKN+ A+G G    A    +         G G+ +P  G   LYP LP     S  G+
Sbjct: 7  YPKNYHASGIGLVNLAALGYSKNEVSGGNEGGGAPKPKAG---LYPSLPYPSSESVGGM 62


>AE014296-1773|AAF50189.2|  925|Drosophila melanogaster CG8107-PA
          protein.
          Length = 925

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 5  YPKNFKANGWGWHRTANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDASFSGV 63
          YPKN+ A+G G    A    +         G G+ +P  G   LYP LP     S  G+
Sbjct: 7  YPKNYHASGIGLVNLAALGYSKNEVSGGNEGGGAPKPKAG---LYPSLPYPSSESVGGM 62


>M20230-1|AAA28721.1| 1501|Drosophila melanogaster protein (
            D.melanogaster ninaCencoded long protein mRNA, complete
            cds. ).
          Length = 1501

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 2    FNYYPKNFKANGWGWHRTANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDASFS 61
            +N Y  N+    WG HR+ +   ++KG+           P + + + Y   P++   ++ 
Sbjct: 1297 YNSYNSNYNNQNWGEHRSGSRRNSLKGY----AAPPPPPPPMPSSNYYRNNPNQQQRNYQ 1352

Query: 62   GVKLYP 67
                YP
Sbjct: 1353 QRSSYP 1358


>J03131-1|AAA28718.1| 1501|Drosophila melanogaster protein (
            D.melanogaster ninaCprotein genes, complete cds. ).
          Length = 1501

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 2    FNYYPKNFKANGWGWHRTANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDASFS 61
            +N Y  N+    WG HR+ +   ++KG+           P + + + Y   P++   ++ 
Sbjct: 1297 YNSYNSNYNNQNWGEHRSGSRRNSLKGY----AAPPPPPPPMPSSNYYRNNPNQQQRNYQ 1352

Query: 62   GVKLYP 67
                YP
Sbjct: 1353 QRSSYP 1358


>AE014134-1263|AAF52504.3| 1501|Drosophila melanogaster CG5125-PB,
            isoform B protein.
          Length = 1501

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 2    FNYYPKNFKANGWGWHRTANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDASFS 61
            +N Y  N+    WG HR+ +   ++KG+           P + + + Y   P++   ++ 
Sbjct: 1297 YNSYNSNYNNQNWGVHRSGSRRNSLKGY----AAPPPPPPPMPSSNYYRNNPNQQQRNYQ 1352

Query: 62   GVKLYP 67
                YP
Sbjct: 1353 QRSSYP 1358


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.313    0.133    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,891,138
Number of Sequences: 52641
Number of extensions: 157923
Number of successful extensions: 251
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 5
length of query: 114
length of database: 24,830,863
effective HSP length: 75
effective length of query: 39
effective length of database: 20,882,788
effective search space: 814428732
effective search space used: 814428732
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)