GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000095-TA|BGIBMGA000095-PA|undefined
         (114 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ...    29   1.0  
Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z48584-2|CAA88477.2|  481|Caenorhabditis elegans Hypothetical pr...    26   7.4  
Z68750-5|CAA92969.1| 1032|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z68300-3|CAA92618.1| 1032|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ...    25   9.8  

>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
          protein Y113G7C.1 protein.
          Length = 1494

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 3  NYYPKNFKANGWGWHRTANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDA 58
          NY+ K    + +G+H + NA    K  +N+ + +GS   L  + +  P +    DA
Sbjct: 31 NYHGKGHLPDSFGYHHSPNAPDDSKSSINRPKTQGSPR-LTPDSNRAPHIAVSQDA 85


>Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical
          protein ZK757.3b protein.
          Length = 1037

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 19 TANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDASFS 61
          T++ + ++   +      G + PL  NGSL P   ++D  S S
Sbjct: 16 TSSGSGSMSPPITSRPASGQASPLTSNGSLSPPQYADDQGSVS 58


>Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical
          protein ZK757.3b protein.
          Length = 1037

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 19 TANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDASFS 61
          T++ + ++   +      G + PL  NGSL P   ++D  S S
Sbjct: 16 TSSGSGSMSPPITSRPASGQASPLTSNGSLSPPQYADDQGSVS 58


>Z48584-2|CAA88477.2|  481|Caenorhabditis elegans Hypothetical
          protein ZK1321.2a protein.
          Length = 481

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 7  KNFKANGWGWHRTANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPS 54
          KN +   W W ++  + AA     N E G+G    L+ NG    +LPS
Sbjct: 27 KNKEKEEWKWAQSLASRAAEMASGNSEEGKGM---LLRNGDDRIRLPS 71


>Z68750-5|CAA92969.1| 1032|Caenorhabditis elegans Hypothetical
          protein T22B3.2a protein.
          Length = 1032

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 19 TANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDASFS 61
          T++ + ++   +      G + PL  NGSL P +  +   S++
Sbjct: 16 TSSGSGSLSPPITSRPASGQASPLSSNGSLSPPVDDQGSVSYN 58


>Z68300-3|CAA92618.1| 1032|Caenorhabditis elegans Hypothetical
          protein T22B3.2a protein.
          Length = 1032

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 19 TANAAAAVKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDASFS 61
          T++ + ++   +      G + PL  NGSL P +  +   S++
Sbjct: 16 TSSGSGSLSPPITSRPASGQASPLSSNGSLSPPVDDQGSVSYN 58


>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
           protein Y20F4.4 protein.
          Length = 1319

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 6   PKNFKANGWGWHRTANAAAAVKGFLNKERGEGSSEP 41
           P+N   NG GW+  AN  +A       +    SS P
Sbjct: 233 PQNHHQNGGGWNPCANPPSARNAPATVKDNRSSSRP 268


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.133    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,083
Number of Sequences: 27539
Number of extensions: 73058
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 7
length of query: 114
length of database: 12,573,161
effective HSP length: 72
effective length of query: 42
effective length of database: 10,590,353
effective search space: 444794826
effective search space used: 444794826
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)