GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000095-TA|BGIBMGA000095-PA|undefined
         (114 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   0.67 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   6.3  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
          isomerase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 0.67
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 7  KNFKANGWGWHRTANAAAAVKGFLNKERGEGSSEPLIGNGSLY 49
          K F    W  + T +    + GFL K   + + E ++G  S+Y
Sbjct: 4  KFFVGGNWKMNGTKSEINDIVGFLKKGPLDSNVEVVVGVPSIY 46


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 8   NFKANGWGWHRTANAAAAVKGFLNKERGEGSSEPLI 43
           N K N    H T++++AA    L   RG  SS+ ++
Sbjct: 404 NCKINRKVHHTTSSSSAAGGEGLADRRGSESSDSVL 439


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.133    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,111
Number of Sequences: 429
Number of extensions: 732
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 114
length of database: 140,377
effective HSP length: 50
effective length of query: 64
effective length of database: 118,927
effective search space:  7611328
effective search space used:  7611328
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)
S2: 39 (19.8 bits)