GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000095-TA|BGIBMGA000095-PA|undefined
         (114 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02940.1 68417.m00401 oxidoreductase, 2OG-Fe(II) oxygenase fa...    25   9.2  
At1g50020.1 68414.m05613 expressed protein                             25   9.2  

>At4g02940.1 68417.m00401 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to A. thaliana hypothetical
           protein T13L16.2, GenBank accession number 2708738;
           contains Pfam domain PF03171 2OG-Fe(II) oxygenase
           superfamily
          Length = 569

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 26  VKGFLNKERGEGSSEPLIGNGSLYPKLPSEDDAS 59
           +KGF  KE+ +G +  ++    LY +L  ED+ S
Sbjct: 222 IKGFQAKEQVKGHTVNVVKGLKLYEELLKEDEIS 255


>At1g50020.1 68414.m05613 expressed protein
          Length = 209

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 12 NGWGWHRTANAAAAVKGFLNKERGEGSSEPL 42
          N   WHR   +++A+ G  N+ +GE   E L
Sbjct: 38 NSRSWHRLRVSSSALNGGDNQSKGEEPPESL 68


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.133    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,232
Number of Sequences: 28952
Number of extensions: 77409
Number of successful extensions: 119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 2
length of query: 114
length of database: 12,070,560
effective HSP length: 72
effective length of query: 42
effective length of database: 9,986,016
effective search space: 419412672
effective search space used: 419412672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)