GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000094-TA|BGIBMGA000094-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (120 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    25   2.5  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    25   2.5  
SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   4.3  
SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.3  
SPAC977.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.3  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    24   7.5  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    24   7.5  

>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 65  RLRDSNCTTLMLIVVVTVFLLVEIPVAV---VTILHIISSTIVEILDYHI 111
           R  D+ C    LIV + +F++  IP  V   +T  H+  + I E++  +I
Sbjct: 552 RYYDTQCPVWALIVALLIFIVNFIPQGVLEGITNQHVGLNIITELIGGYI 601


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 23  LFVHLIPCTSLVVLNVLLFRAMRTAQINRQKLFKENRKSECKRLRDSNCTTLMLIVVVTV 82
           ++VH+     L++  V++F A  +  I  + +   +RK++      S C T++++     
Sbjct: 121 MYVHVFNILILLLAPVIIFTAEMSMMIQVRIICAHDRKTQRIMTVISACLTVLVLAFWIT 180

Query: 83  FLLVEIPVAVVTILHIISSTIVEI-LDYHIANIL 115
            +  +I   ++ +  + S TIV     Y IA IL
Sbjct: 181 NMCQQIQY-LLWLTPLSSKTIVGYSWPYFIAKIL 213


>SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 203

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 62 ECKRLRDSNCTTLMLIVVVT 81
          EC RLR  +C T +L VV T
Sbjct: 25 ECSRLRGPHCGTYLLKVVGT 44


>SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 203

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 62 ECKRLRDSNCTTLMLIVVVT 81
          EC RLR  +C T +L VV T
Sbjct: 25 ECSRLRGPHCGTYLLKVVGT 44


>SPAC977.05c |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 204

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 62 ECKRLRDSNCTTLMLIVVVT 81
          EC RLR  +C T +L VV T
Sbjct: 26 ECSRLRGPHCGTYLLKVVGT 45


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 39  LLFRAMRTAQINRQKLFKENRKSECKRLRDSNCTTLMLI---VVVTVFLLVEIPVAVVTI 95
           +LF+ +         L  E+RKSE  +LRD   T  +L+    + +V+   +  +  + +
Sbjct: 28  MLFQGVNLINNQPIALKFESRKSEVPQLRDEYLTYKLLMGLPGIPSVYYYGQEGMYNLLV 87

Query: 96  LHIISSTIVEILDY 109
           + ++  ++ ++ DY
Sbjct: 88  MDLLGPSLEDLFDY 101


>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 9/41 (21%), Positives = 24/41 (58%)

Query: 77   IVVVTVFLLVEIPVAVVTILHIISSTIVEILDYHIANILVL 117
            +V  T++ L++IP ++  + H +  +++ + D H   ++ L
Sbjct: 1083 LVFETLYSLLDIPESLNHLTHFLQVSVMGLEDEHYIKLVSL 1123


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.335    0.143    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 455,478
Number of Sequences: 5004
Number of extensions: 14644
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 8
length of query: 120
length of database: 2,362,478
effective HSP length: 65
effective length of query: 55
effective length of database: 2,037,218
effective search space: 112046990
effective search space used: 112046990
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.6 bits)
S2: 48 (23.4 bits)