GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000094-TA|BGIBMGA000094-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (120 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1259 - 27382639-27384284,27386570-27386612                       27   5.4  
11_06_0445 - 23679918-23680282,23680415-23683349                       26   7.1  
11_06_0291 + 22008412-22012284                                         26   7.1  
09_03_0101 + 12374771-12374926,12375505-12375731,12375816-123759...    26   7.1  
06_02_0019 - 10656005-10657511,10657712-10658739                       26   7.1  
05_04_0393 - 20895485-20895645,20895750-20896358,20896541-208966...    26   7.1  
06_03_0013 - 15393830-15394060,15394238-15394672                       26   9.4  
03_05_0040 + 20162923-20163255                                         26   9.4  

>12_02_1259 - 27382639-27384284,27386570-27386612
          Length = 562

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 59  RKSECKRLRDSNCTTLMLIVVVTVFLLVEIP-VAVVTILHIISST 102
           R   C+RL     T  +L+ + TVF    IP  A  T+L++ S T
Sbjct: 15  RNETCERLGTIGTTANLLVYLTTVF---HIPSAAAATLLNVFSGT 56


>11_06_0445 - 23679918-23680282,23680415-23683349
          Length = 1099

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 63  CKRLRDSNCTTLMLIVVVTVFLLVEIPVAVVTILHI 98
           CK L     T+ +L VVV V  +V I +A V I+ +
Sbjct: 725 CKELSAKRKTSYILTVVVPVSTIVMITLACVAIMFL 760


>11_06_0291 + 22008412-22012284
          Length = 1290

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 15   ISYFGFRVLFVHLIPCTSLVVLNVLLFRAMRTAQINRQKL--FKENRKSECKRLRDSNCT 72
            +S  G R LF  LI   +    N L    + + Q+N+  L    +  K +C RLR  +CT
Sbjct: 1145 LSISGARYLFPLLIKSDN----NKLAKVTLSSTQLNQDDLEVLAKLPKLQCVRLRHISCT 1200

Query: 73   TLMLI 77
              MLI
Sbjct: 1201 ESMLI 1205


>09_03_0101 +
           12374771-12374926,12375505-12375731,12375816-12375971,
           12376066-12376251,12376407-12376591,12376984-12376991
          Length = 305

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 54  LFKENRKSECKRLRDSNCTTLMLIVVVTVFLLVEIPVAVVTILHIISSTIVEI 106
           LF E R+S+       +  T++LIV+  +F    +  +VV  LH  S   +EI
Sbjct: 150 LFWETRRSDFGVSMSHHLATVVLIVLSYIFRFARVG-SVVLALHDASDIFLEI 201


>06_02_0019 - 10656005-10657511,10657712-10658739
          Length = 844

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 54  LFKENRKSECKRLRDSNCTTLMLIVVVTVFLLVE--IPVAVVTILHIISSTIV 104
           + ++NR+   +    SN T+ M  VVV V LL E   P     +L  +++TIV
Sbjct: 702 VLRDNRRRRYRAFFYSNSTSFMASVVVIVLLLPESASPHVNEWLLKAMNTTIV 754


>05_04_0393 -
           20895485-20895645,20895750-20896358,20896541-20896616,
           20896729-20896920,20897118-20897438,20897880-20898119,
           20898205-20898522,20898621-20898678,20898778-20898936,
           20900090-20900308,20900400-20900614
          Length = 855

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 26  HLIPCTSLVVLNVLLFRAMRTAQINRQKLFKENRKSECKRLRDSNCTTLMLIVVVTVFLL 85
           HL P     +L  +  +  R   +N+Q+L  +  KS CK +    C  L L VV  V+L 
Sbjct: 338 HLPPRLKQQILAYMCLK-FRAESLNQQQLMDQLPKSICKGI----CEYLFLPVVKDVYLF 392

Query: 86  VEIPVAVVTIL 96
             +   V+ ++
Sbjct: 393 KGVSREVLLLM 403


>06_03_0013 - 15393830-15394060,15394238-15394672
          Length = 221

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 9/66 (13%)

Query: 13 YFISYFGFRVLFVHLIPCTSLVVLNVLLFRAMR------TAQINRQKLFKEN-RKSECKR 65
          + +S+  F  L + LI  + LV L+  L RA +         + RQ  F+   R+  C+R
Sbjct: 5  HLLSFIPFSFLLLFLI--SPLVPLSAPLHRAAQGEDRRGRGALRRQPAFRRRTRRDRCRR 62

Query: 66 LRDSNC 71
            DS C
Sbjct: 63 GNDSRC 68


>03_05_0040 + 20162923-20163255
          Length = 110

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/51 (23%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 69  SNCTTLMLIVVVTVFLLVEIPVAVVTILHIISSTIVEILDYHIANILVLIL 119
           ++ T+ +L++     + + I VAV  ++  I STI+ +    ++ I++++L
Sbjct: 2   TSMTSFVLVLSALAIMTISISVAVTIVISTIVSTIL-VARLSVSGIVLVLL 51


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.335    0.143    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,084
Number of Sequences: 37544
Number of extensions: 79405
Number of successful extensions: 319
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 8
length of query: 120
length of database: 14,793,348
effective HSP length: 73
effective length of query: 47
effective length of database: 12,052,636
effective search space: 566473892
effective search space used: 566473892
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.6 bits)
S2: 54 (25.8 bits)