Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000093-TA|BGIBMGA000093-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (178 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    28   0.69 
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    27   2.1  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   4.9  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    25   8.5  

>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 31  YTNFTSDDFCASNNSHVYLNVTCEFAISYAEPMYGYIAPFLLATTTVANTLIVVVLSRRH 90
           Y NFT  D C SN+  V++ +     I+++E ++  I     A T    ++  ++ +   
Sbjct: 461 YANFT--DTCVSNDISVWIQIPAYVLIAFSE-IFASITGLEFAFTKAPPSMKSIITA--- 514

Query: 91  MRTPTNAVLMAMALCDMFTMLFPAPWLFYMYT 122
           +   TNA    +++C   T + P   L +MYT
Sbjct: 515 LFLFTNAFGAILSICISSTAVNPK--LTWMYT 544


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 27  TYFDYTNFTSDDFCASNNSHVYLNVTCEFAISYAEPMY 64
           TY   TN+ +D     +NSH +++      +SY+ P++
Sbjct: 256 TYIGPTNYAADFPVIGSNSHEWVDSFTHAPLSYSLPLF 293


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 57  ISYAEPMYGYIAPFLLATTTVANTLIVVVLSRRHMRTP 94
           ++Y  P  GYI   +L TT    TLI V++  R  R P
Sbjct: 887 MTYKAPEPGYIDKVMLTTTDSDQTLIKVLM--RQTRRP 922


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 26  ITYFDYTNFTSDDFCASNNSHVYLNVTCEFAISYAEPMYGYIAPFLLATTTVANT 80
           +T+F  T  T  + C  N+  +YL+ T    I   + +   I   LL + ++ NT
Sbjct: 165 VTHFITTRTTDPEMCQPNDV-LYLSKTANMKIWLLDKLLNRILFTLLNSDSLVNT 218


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.135    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 877,455
Number of Sequences: 5004
Number of extensions: 36499
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 4
length of query: 178
length of database: 2,362,478
effective HSP length: 68
effective length of query: 110
effective length of database: 2,022,206
effective search space: 222442660
effective search space used: 222442660
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 51 (24.6 bits)