GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000093-TA|BGIBMGA000093-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (178 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    33   0.001
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    33   0.001
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   1.1  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   1.1  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   3.3  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   4.4  

>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 33.1 bits (72), Expect = 0.001
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 71  LLATTTVANTLIVVVLSRRHMRTPT--NAVLMAMALCDMFTMLFPAP 115
           L+  + +ANT ++V++ +R  +TP+  N +LM +A+ D+       P
Sbjct: 62  LMVFSAIANTTVLVLIVKRRRKTPSRINTMLMHLAIADLLVTFLMMP 108


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 33.1 bits (72), Expect = 0.001
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 71  LLATTTVANTLIVVVLSRRHMRTPT--NAVLMAMALCDMFTMLFPAP 115
           L+  + +ANT ++V++ +R  +TP+  N +LM +A+ D+       P
Sbjct: 62  LMVFSAIANTTVLVLIVKRRRKTPSRINTMLMHLAIADLLVTFLMMP 108


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 7   NSTNDFEFQKP-FNYSINENITYFDYTNFTSDDFC 40
           ++ + ++F  P FN++   N  Y +Y N+     C
Sbjct: 199 DTESSYQFNDPQFNFNYQYNQAYSNYNNYQEGFSC 233


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 7   NSTNDFEFQKP-FNYSINENITYFDYTNFTSDDFC 40
           ++ + ++F  P FN++   N  Y +Y N+     C
Sbjct: 219 DTESSYQFNDPQFNFNYQYNQAYSNYNNYQEGFSC 253


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 33  NFTSDDFCASNNSHVYLNVTCEFAISYAEPMYGYIAPFLLATTTVAN 79
           N+T++    + +SH Y      +A +YA   YG + P  L + T  N
Sbjct: 285 NWTANGHGHNTSSHNY------YAQNYAPTYYGQMQPDYLNSQTTQN 325



 Score = 21.4 bits (43), Expect = 4.4
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 129 PLSPVRACQAWNYMNEARPREREMGRLFMMLMQCDVTPRAYSQT 172
           PL  V   Q ++Y     PR++   R      Q D+    +++T
Sbjct: 106 PLESVPFPQVYSYFAGVNPRKQRRERTTFTRAQLDLLEGLFAKT 149


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 14  FQKPFNYSINENITYFDYTNFTSDD 38
           ++ P NY I      +++ N  SDD
Sbjct: 405 YKLPPNYEIRHKFKLWNFNNQISDD 429


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.327    0.135    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,633
Number of Sequences: 317
Number of extensions: 2039
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 7
length of query: 178
length of database: 114,650
effective HSP length: 53
effective length of query: 125
effective length of database: 97,849
effective search space: 12231125
effective search space used: 12231125
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 41 (20.6 bits)