Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000093-TA|BGIBMGA000093-PA|IPR000276|Rhodopsin-like GPCR
superfamily
(178 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 29 2.8
03_06_0243 + 32598782-32598793,32599037-32599123,32601052-326012... 29 2.8
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581... 27 6.5
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 27 6.5
04_04_0515 - 25829298-25829750,25829822-25829944,25831294-258314... 27 8.5
>07_03_0329 + 16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 30 DYTNFTSDDFCASNNSHVYLNVTCEFAISYAEPMY 64
D NFT+D + N+ YL +C ++S P+Y
Sbjct: 1017 DDNNFTADQLQSVTNNLCYLYTSCTRSVSIPPPVY 1051
>03_06_0243 +
32598782-32598793,32599037-32599123,32601052-32601257,
32601342-32601453,32601628-32601724,32601815-32601924,
32601996-32602153,32602559-32602697,32602776-32602892,
32603084-32603140,32603280-32603351,32603617-32603736,
32603818-32603983,32604067-32604188,32604373-32604447,
32604636-32604775,32604860-32604922,32605002-32605065,
32605161-32605296,32605401-32605474,32605570-32605664,
32605761-32605792,32606344-32606474,32606595-32606827,
32606916-32607723,32607815-32607967
Length = 1192
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 29 FDYTNFTSDDFCASNNSHVYLNVTCEFAISYAEPMY 64
+D +FT+D+ N+ Y+ C A+S P Y
Sbjct: 721 YDENHFTADELQTLTNNLCYIYARCTHAVSVVPPAY 756
>06_03_0650 +
23157130-23157582,23157687-23157898,23157982-23158128,
23158214-23158347,23158442-23158551,23158711-23158817,
23159045-23159183,23159286-23159402,23159737-23159844,
23159927-23159998,23160108-23160230,23160336-23160495,
23160585-23160706,23160825-23160962,23161042-23161184,
23161305-23161367,23161567-23161630,23161709-23161844,
23162123-23162196,23162764-23162858,23162951-23162982,
23163104-23163276
Length = 973
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 29 FDYTNFTSDDFCASNNSHVYLNVTCEFAISYAEP-MYGYIAPF 70
+D NFT+D+ N+ Y C ++S P Y ++A F
Sbjct: 886 WDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAF 928
>04_04_1693 +
35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 27.5 bits (58), Expect = 6.5
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 95 TNAVLMAMAL-C-DMFTMLFPAPWLFYM--YTFG--NHYK-PLSPVR--ACQAWNYMNEA 145
T+A+L +AL C + + ++ PA M Y G N K P + VR C AW + E
Sbjct: 191 THAILRKLALGCINQYIVVMPAALYMSMDQYLQGLFNLAKDPSADVRKLVCSAWVQLIEV 250
Query: 146 RPREREMGRLFMMLMQCDVTPRAYSQTLHQRNV 178
RP E+ +L + + D+T + Q H +NV
Sbjct: 251 RPSILEIFQLLISCVMLDLTLDSKLQP-HLKNV 282
>04_04_0515 -
25829298-25829750,25829822-25829944,25831294-25831473,
25831687-25831784,25831914-25832007,25832090-25832149,
25832350-25832434,25832513-25832562
Length = 380
Score = 27.1 bits (57), Expect = 8.5
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 10/138 (7%)
Query: 5 IDNSTNDFEFQKPFNYSINENITYFDYTNFTSDDFCASNNSHVYLNVTCEFAISY-AEPM 63
ID+ N F F + YS+NE Y YT F + +S HV + FA P
Sbjct: 2 IDSFLNKF-FPSGYPYSVNEG--YLTYTKFRALQHFSSAMLHVLSTQSLLFAAGLRPTPA 58
Query: 64 YGYIAPFLLAT-TTVANTLIVVVLSRRHMRTPTNAVLMAMALCDMFT---MLFP-APWLF 118
++L A LI + R P + ++A L D T ++ P P LF
Sbjct: 59 QATAVSWILKDGMQHAGKLICSGMGARMDSEPKSWRILADVLYDFGTALEVISPLCPQLF 118
Query: 119 Y-MYTFGNHYKPLSPVRA 135
+ FGN K ++ V A
Sbjct: 119 LEVAGFGNFAKGMAVVAA 136
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.327 0.135 0.427
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,025,562
Number of Sequences: 37544
Number of extensions: 189623
Number of successful extensions: 419
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 5
length of query: 178
length of database: 14,793,348
effective HSP length: 78
effective length of query: 100
effective length of database: 11,864,916
effective search space: 1186491600
effective search space used: 1186491600
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 57 (27.1 bits)
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