GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000093-TA|BGIBMGA000093-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (178 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25560.2 68416.m03179 protein kinase family protein contains ...    32   0.19 
At3g25560.1 68416.m03178 protein kinase family protein contains ...    30   1.0  
At2g25640.1 68415.m03073 transcription elongation factor-related...    27   7.1  
At1g71400.1 68414.m08246 disease resistance family protein / LRR...    27   7.1  
At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille prot...    27   9.4  
At1g48660.1 68414.m05446 auxin-responsive GH3 family protein sim...    27   9.4  
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S...    27   9.4  
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S...    27   9.4  

>At3g25560.2 68416.m03179 protein kinase family protein contains
           Prosite:PS00108: Serine/Threonine protein kinases
           active-site signature and PS00107: Protein kinases
           ATP-binding region signature
          Length = 636

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 4   TIDNSTNDFEFQKPFNYSINENITYFDYTNFTS 36
           T+D STN+F  Q PF  S ++N+ YF   N  S
Sbjct: 133 TLDLSTNNFTGQIPFTLSYSKNLQYFRRVNNNS 165


>At3g25560.1 68416.m03178 protein kinase family protein contains
           Prosite:PS00108: Serine/Threonine protein kinases
           active-site signature and PS00107: Protein kinases
           ATP-binding region signature
          Length = 635

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 4   TIDNSTNDFEFQKPFNYSINENITYFDYTN 33
           T+D STN+F  Q PF  S ++N+ Y    N
Sbjct: 133 TLDLSTNNFTGQIPFTLSYSKNLQYLRVNN 162


>At2g25640.1 68415.m03073 transcription elongation factor-related
           contains weak similarity to transcription elongation
           factors
          Length = 643

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 13  EFQKPFNYSINENITYFDYTNFTSDDFCASNNSHVYLNVTCEFAISYAEPMYGYIA 68
           E  KPF   + +N++Y D   F+ DD    N+    L    EF ++    M G +A
Sbjct: 202 EAVKPF---VQDNVSYSDNV-FSKDDLLQGNDLSWALESDIEFTVNCQNEMIGAMA 253


>At1g71400.1 68414.m08246 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 847

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 8   STNDFEFQKPFNYSINENITYFD--YTNFT 35
           S+N+F    PF+ SI  N+ YFD  Y +F+
Sbjct: 286 SSNNFTSTFPFDMSIFHNLEYFDVSYNSFS 315


>At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille protein
           (ZWILLE) identical to SP|Q9XGW1 PINHEAD protein (ZWILLE
           protein) {Arabidopsis thaliana}; contains Pfam profiles
           PF02171: Piwi domain, PF02170: PAZ domain
          Length = 988

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 29  FDYTNFTSDDFCASNNSHVYLNVTCEFAISYAEP-MYGYIAPF 70
           +D  NFT+D   +  N+  Y    C  ++S   P  Y ++A F
Sbjct: 897 WDENNFTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAF 939


>At1g48660.1 68414.m05446 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 573

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 30  DYTNFTSDDFCASNNSHVYLNVTCEFAISYAEPMYGYIAPFLLATTTVANTL 81
           +YT+      C  NN  VY ++ C   +S  E + G  A F  A     N L
Sbjct: 174 EYTSPDQVILCPDNNQSVYCHLLC--GLSQREKVVGVSATFAHALIKAINAL 223


>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
           SP|O04379 Argonaute protein (AGO1) {Arabidopsis
           thaliana}; contains Pfam profiles PF02171: Piwi domain,
           PF02170: PAZ domain
          Length = 1050

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 29  FDYTNFTSDDFCASNNSHVYLNVTCEFAISYAEP-MYGYIAPF 70
           +D  NFT+D   +  N+  Y    C  ++S   P  Y ++A F
Sbjct: 950 WDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAF 992


>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
           SP|O04379 Argonaute protein (AGO1) {Arabidopsis
           thaliana}; contains Pfam profiles PF02171: Piwi domain,
           PF02170: PAZ domain
          Length = 1048

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 29  FDYTNFTSDDFCASNNSHVYLNVTCEFAISYAEP-MYGYIAPF 70
           +D  NFT+D   +  N+  Y    C  ++S   P  Y ++A F
Sbjct: 948 WDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAF 990


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.135    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,229,128
Number of Sequences: 28952
Number of extensions: 162727
Number of successful extensions: 403
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 9
length of query: 178
length of database: 12,070,560
effective HSP length: 77
effective length of query: 101
effective length of database: 9,841,256
effective search space: 993966856
effective search space used: 993966856
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 56 (26.6 bits)