Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000092-TA|BGIBMGA000092-PA|IPR007243|Autophagy protein
Apg6, IPR013819|Lipoxygenase, C-terminal
         (427 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11412| Best HMM Match : APG6 (HMM E-Value=2.52234e-44)              94   2e-19
SB_15048| Best HMM Match : IMS (HMM E-Value=0)                         33   0.59 
SB_56605| Best HMM Match : WD40 (HMM E-Value=2.5e-12)                  31   2.4  
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.1  
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)         30   4.1  
SB_59439| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_48119| Best HMM Match : TLD (HMM E-Value=2e-14)                     29   5.5  
SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)                 29   7.2  
SB_21207| Best HMM Match : Cor1 (HMM E-Value=8.1e-26)                  29   9.5  

>SB_11412| Best HMM Match : APG6 (HMM E-Value=2.52234e-44)
          Length = 587

 Score = 94.3 bits (224), Expect = 2e-19
 Identities = 40/77 (51%), Positives = 58/77 (75%)

Query: 197 LDKEQDVYWREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEKLKKTNVFKATFHISDSGQ 256
           L++ +  Y+ EY +Y+++L+  ED+ +  + Q+ Y Q+QL+KLKKTNVF +TFHI  +G 
Sbjct: 218 LEEAEKAYYTEYCEYQRELLDFEDEKQSVDNQMMYAQAQLDKLKKTNVFNSTFHIWHNGH 277

Query: 257 FGIINNFRLGRLPTAPV 273
           FG INNFRLGRLP+ PV
Sbjct: 278 FGTINNFRLGRLPSVPV 294



 Score = 75.8 bits (178), Expect = 6e-14
 Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 11/130 (8%)

Query: 6   TFVSFSCQRCLQPLKLDDSLNNLGEHTIADLTLQIRRNNEADLDL---QSSSLDHYVPPF 62
           T VSF CQRC QPLK+ +S+ ++   T+A+LT  +      D D+   +S   D    P 
Sbjct: 16  THVSFVCQRCYQPLKVHNSITSVDTDTLAELTAPLPPFATKDDDVAADESRDADCSASPR 75

Query: 63  RMSESGNGANGFMVISDGWETTSLGHQLHVKATLFDLLSNNSYVDHPLCDECTDTLLELM 122
           +  +        +   +  +         V   LFD++S  + VDHPLC+ECTD LL+ +
Sbjct: 76  KDDD--------VAADESRDADCSASPRKVTTQLFDIMSGQTEVDHPLCEECTDALLDQL 127

Query: 123 DNQLKQTEAE 132
           D QL+ TE E
Sbjct: 128 DQQLRITEDE 137


>SB_15048| Best HMM Match : IMS (HMM E-Value=0)
          Length = 660

 Score = 32.7 bits (71), Expect = 0.59
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 8/120 (6%)

Query: 289 LSSLARKINFNFQRYKLVPYG---NHSYIEVLEDQKVLPLYGSGGFRFLWDTKFDAAMVA 345
           LS +A KI   F  +    Y        I+ L+  K+  ++G G FR     K      A
Sbjct: 144 LSKIANKIARKFPEHTKGVYTIDTEEKKIKALKWTKIEDVWGIG-FRLSKKMKAKNIFTA 202

Query: 346 FLDCLQQFKE---QVEMGNTGFCLPYRIDKGKIEDTASPPHAYSIKIQFNSEEHWTKALK 402
           F D +Q + E   + EMG TG  L Y ++   + D   P +  SI I  + ++  T  L+
Sbjct: 203 F-DFVQPYNEAFIKKEMGVTGLRLKYELEGKSVIDIDEPKNKKSIAITRSFKQDITNILE 261


>SB_56605| Best HMM Match : WD40 (HMM E-Value=2.5e-12)
          Length = 630

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 1   MSDSKTFVSFSCQRCLQPLKLDDSLNNLGEHTIADLTLQIRRNNEADLDLQSSSLDHYVP 60
           +SD + F +      +  LK       L  H    +T+++++  E+D  + + S DH+V 
Sbjct: 322 ISDHQLFAAMGNSVRIWDLKTFSMTGKLSGHAAPVMTIKLKKR-ESDTLVFTGSRDHFVK 380

Query: 61  PFRMSESGNG 70
            + +SES  G
Sbjct: 381 IYELSESNVG 390


>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1524

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/42 (30%), Positives = 25/42 (59%)

Query: 197 LDKEQDVYWREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEK 238
           L++E+D   R+  K  KD +T +D+++    +   T+ QLE+
Sbjct: 818 LERERDSLKRDKDKLHKDYITIDDELQNVRSRYTRTKKQLEE 859


>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
          Length = 2024

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 10/55 (18%), Positives = 31/55 (56%)

Query: 197  LDKEQDVYWREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEKLKKTNVFKATFHI 251
            ++K  +VY  E  +   D+ + + Q+  YE ++A+ + +++ +++ N +  +  +
Sbjct: 1513 VEKRVEVYRSEVVEKETDIQSLKSQLYKYESEVAFLKQEVDAVQQRNEYNLSIQL 1567


>SB_59439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 44 NEADLDLQSSSLDHYVPPFR------MSESGNGANGFMVISDGWETTS-LGHQL 90
          +E DLD +S   DH V  FR       S +  G NG   ++ GW   S +G QL
Sbjct: 8  DEDDLDARSEKQDHSVVEFRSNSSDPTSSTSGGGNGTGYLTWGWSAMSYVGGQL 61


>SB_48119| Best HMM Match : TLD (HMM E-Value=2e-14)
          Length = 870

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 44 NEADLDLQSSSLDHYVPPFR------MSESGNGANGFMVISDGWETTS-LGHQL 90
          +E DLD +S   DH V  FR       S +  G NG   ++ GW   S +G QL
Sbjct: 24 DEDDLDARSEKQDHSVVEFRSNSSDPTSSTSGGGNGTGYLTWGWSAMSYVGGQL 77


>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
          Length = 1223

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 21  LDDSLNNLGEHTIADL-TLQIRRNNEADLDLQSSSLDHYVPPFR 63
           +++++ N+  H I ++ TL I+R    D DL++ S D ++P FR
Sbjct: 114 VEETMKNV--HPIYNIKTLMIKRELAKDPDLKNESWDRFLPKFR 155


>SB_21207| Best HMM Match : Cor1 (HMM E-Value=8.1e-26)
          Length = 375

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 19/92 (20%), Positives = 37/92 (40%)

Query: 215 LMTTEDQMKFYECQLAYTQSQLEKLKKTNVFKATFHISDSGQFGIINNFRLGRLPTAPVD 274
           L+   D   F+ CQL +  +     K+      +  +  SG     ++  +G   TAPV 
Sbjct: 71  LLQGSDHQTFWPCQLTFIVAMPLNPKRNKPAAKSSKLDTSGFDEFDDDLMIGEEETAPVK 130

Query: 275 WSEINAAWGQTVLLLSSLARKINFNFQRYKLV 306
               ++ +  +     SL   +NF+   + L+
Sbjct: 131 GKVFSSLFEVSFATFFSLLLTLNFHVDVFYLI 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,745,054
Number of Sequences: 59808
Number of extensions: 469902
Number of successful extensions: 983
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 977
Number of HSP's gapped (non-prelim): 11
length of query: 427
length of database: 16,821,457
effective HSP length: 84
effective length of query: 343
effective length of database: 11,797,585
effective search space: 4046571655
effective search space used: 4046571655
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)