GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000092-TA|BGIBMGA000092-PA|IPR007243|Autophagy protein
Apg6, IPR013819|Lipoxygenase, C-terminal
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...   160   4e-40
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    31   0.31 
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    29   1.6  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   5.0  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    27   6.6  

>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score =  160 bits (388), Expect = 4e-40
 Identities = 104/346 (30%), Positives = 159/346 (45%), Gaps = 24/346 (6%)

Query: 89  QLHVKATLFDLLSNNSYVDHPLCDECTDTLLELMDNQLK--QTEAEWXXXXXXXXXXXXX 146
           ++ +   +FDLLS+ + VDHPLC EC + L E M   L+  + E +              
Sbjct: 121 KIEIYNRIFDLLSSKTKVDHPLCVECAELLTEEMSKTLRALKEEKKMYFNYDNFLSSQTV 180

Query: 147 XXXXXXXXXXXXXXXWKQEQSRXXXXXXXXXXXXRAMNXXXXXXXXXXXXLDKEQDVYWR 206
                           KQ   +            +                 +EQ+ Y  
Sbjct: 181 HEENTAALDSEIDELMKQINEKEEKIEEISDETDKLQKLLRELDEEKEKVYAEEQEFY-N 239

Query: 207 EYTKYRKDLMTTEDQMKFYECQLAYTQSQLEKLKKTNVFKATFHISD------SGQFGII 260
              +++   ++ E Q      +  +   +LEKL+K NVF   F+IS        G    I
Sbjct: 240 NLNQFQIKKLSLERQYDCANLEFEHNSRKLEKLQKMNVFSDIFYISHYSEPNGEGSIATI 299

Query: 261 NNFRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQRYKLVPYGNHSYIEVLE-- 318
           N  RLGRLP+  V+W+EINAAWG TVLLL  L  K++F+   Y+L P+G+ S+I   +  
Sbjct: 300 NGLRLGRLPSQKVNWAEINAAWGMTVLLLDVLTEKLDFHSSSYQLKPFGSQSFIIRFDRD 359

Query: 319 --DQKVLP----LYGSGGFRFLWDTKFDAAMVAFLDCLQQFKEQVEMGNTGFCLPYRIDK 372
               +V P    L+ SG  +   + +FD  MVAFLD L QF +          LPY I+ 
Sbjct: 360 PNGNQVKPTKLDLFSSGELKIFMNRRFDQGMVAFLDYLHQFGDFCAAKTPSAVLPYAIEN 419

Query: 373 GKIEDTASPPHAYSIKIQFNSEEHWTKALKYMLTNLKWALTWISSQ 418
            +I           I++ FN +E+WT+ALK++LT++K+   ++SSQ
Sbjct: 420 DRIGGKC-------IRLAFNQDENWTRALKFVLTDIKFLEAYVSSQ 458


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 18/68 (26%), Positives = 32/68 (47%)

Query: 265 LGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQRYKLVPYGNHSYIEVLEDQKVLP 324
           LG +PT  +     +   G T + ++S+   ++ N  +Y  V      + EV+E  K + 
Sbjct: 569 LGNVPTLILGGDVYHPGVGATGVSIASIVASVDLNGCKYTAVSRSQPRHQEVIEGMKDIV 628

Query: 325 LYGSGGFR 332
           +Y   GFR
Sbjct: 629 VYLLQGFR 636


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 3/28 (10%)

Query: 100 LSNNSYVDHPLCDECTDTLLELMDNQLK 127
           L NN YV   LC+E  DT+++L D +LK
Sbjct: 746 LYNNFYV---LCEETMDTVIKLKDGELK 770


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 233 QSQLEKLKKTNVFKATFHISDSGQFGIINNFRLGRLPTA 271
           Q++ + L K  ++K  F  ++SG FG + +  L +LP A
Sbjct: 433 QTKFDTLSK-EIYKTCFLTTESGFFGHLKSIILSQLPAA 470


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 16 LQPLKLDDSLNNLGEHTIADLTLQ-IRRNNEADLDLQSSSLDHYVPPFRMS-ESGNGANG 73
          +  L+L++ LN  GE+ I +LT Q IR + E        +L   V  F  S +S +G   
Sbjct: 6  IDSLQLNELLN-AGEYKIGELTFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQSLHGTKD 64

Query: 74 FMVISDGW----ETTSLGHQLHV 92
          ++     W    +T+S+G Q+H+
Sbjct: 65 WVTTVYLWDPTCDTSSIGLQIHL 87


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,607
Number of Sequences: 5004
Number of extensions: 70915
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 6
length of query: 427
length of database: 2,362,478
effective HSP length: 75
effective length of query: 352
effective length of database: 1,987,178
effective search space: 699486656
effective search space used: 699486656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)