GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000092-TA|BGIBMGA000092-PA|IPR007243|Autophagy protein
Apg6, IPR013819|Lipoxygenase, C-terminal
         (427 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY536865-1|AAT07965.1|  650|Anopheles gambiae tryptophan transpo...    24   6.9  
AJ626713-1|CAF25029.1|  650|Anopheles gambiae tryptophan transpo...    24   6.9  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   9.1  

>AY536865-1|AAT07965.1|  650|Anopheles gambiae tryptophan
           transporter protein.
          Length = 650

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 272 PVDWSEINAAWGQTVL 287
           P+ WSE N AW  T +
Sbjct: 189 PLPWSECNDAWNATCI 204


>AJ626713-1|CAF25029.1|  650|Anopheles gambiae tryptophan
           transporter protein.
          Length = 650

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 272 PVDWSEINAAWGQTVL 287
           P+ WSE N AW  T +
Sbjct: 189 PLPWSECNDAWNATCI 204


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 375 IEDTASPPHAYSIKIQFNSEEHWTKALKYMLTNLKWALTWI 415
           I     PP   +I +   +E  +++ LKY+   L + L+W+
Sbjct: 720 ISSLQQPPEDITITVG-GTEVPFSRTLKYLGVRLHYNLSWV 759


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 402,395
Number of Sequences: 2123
Number of extensions: 15178
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 3
length of query: 427
length of database: 516,269
effective HSP length: 66
effective length of query: 361
effective length of database: 376,151
effective search space: 135790511
effective search space used: 135790511
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)