GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000092-TA|BGIBMGA000092-PA|IPR007243|Autophagy protein
Apg6, IPR013819|Lipoxygenase, C-terminal
         (427 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061424-1|AAL28972.1|  422|Drosophila melanogaster LD35669p pro...   466   e-131
AE014297-3447|AAF56227.1|  422|Drosophila melanogaster CG5429-PA...   466   e-131
L28945-1|AAA50509.1|  910|Drosophila melanogaster p90 ribosomal ...    30   7.0  
BT004472-1|AAO42636.1|  892|Drosophila melanogaster SD05277p pro...    30   7.0  
AE014298-3193|AAF50945.1|  911|Drosophila melanogaster CG17596-P...    30   7.0  

>AY061424-1|AAL28972.1|  422|Drosophila melanogaster LD35669p
           protein.
          Length = 422

 Score =  466 bits (1148), Expect = e-131
 Identities = 219/421 (52%), Positives = 290/421 (68%), Gaps = 4/421 (0%)

Query: 1   MSDS-KTFVSFSCQRCLQPLKLDDSLNNLGEHTIADLTLQIRRNNEADLDLQ-SSSLDHY 58
           MS++ K  VSF+CQRCLQP+ LD+ L  +  H +A+L+L I  +N   LD Q +SS DH+
Sbjct: 1   MSEAEKQAVSFACQRCLQPIVLDEQLEKISVHAMAELSLPIYGDNGNTLDPQDASSFDHF 60

Query: 59  VPPFRMSESGNGANGFMVISDGWETTSLGHQLHVKATLFDLLSNNSYVDHPLCDECTDTL 118
           VPP+R+++S NG  GFM++SDG +   +     +KA LFD LS+NS +DHPLC+EC D++
Sbjct: 61  VPPYRLTDSINGT-GFMLVSDGRDNKKMSAAFKLKAELFDCLSSNSEIDHPLCEECADSM 119

Query: 119 LELMDNQLKQTEAEWXXXXXXXXXXXXXXXXXXXXXXXXXXXXWKQEQSRXXXXXXXXXX 178
           LE+MD +L+  E EW                             K+ + +          
Sbjct: 120 LEIMDRELRIAEDEWDVYKAYLDELEQQRVAPNVEALDKELDELKRSEQQLLSELKELKK 179

Query: 179 XXRAMNXXXXXXXXXXXXLDKEQDVYWREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEK 238
             +++N            L ++++ YWREYTK+R++LM TED  +  ECQ+AY++ QL+K
Sbjct: 180 EEQSLNDAIAEEEQEREELHEQEESYWREYTKHRRELMLTEDDKRSLECQIAYSKQQLDK 239

Query: 239 LKKTNVFKATFHISDSGQFGIINNFRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINF 298
           L+ TN+F  TFHI  +G FG INNFRLGRLP+  VDWSEINAAWGQTVLLLS+LARKI  
Sbjct: 240 LRDTNIFNITFHIWHAGHFGTINNFRLGRLPSVSVDWSEINAAWGQTVLLLSALARKIGL 299

Query: 299 NFQRYKLVPYGNHSYIEVLEDQKVLPLYGSGGFRFLWDTKFDAAMVAFLDCLQQFKEQVE 358
            F+RY++VP+GNHSY+EVL + + LPLYGSGGF+F WDTKFDAAMVAFLDCL QF+++VE
Sbjct: 300 TFERYRVVPFGNHSYVEVLGENRELPLYGSGGFKFFWDTKFDAAMVAFLDCLTQFQKEVE 359

Query: 359 MGNTGFCLPYRIDKGKIEDTASPPHAYSIKIQFNSEEHWTKALKYMLTNLKWALTWISSQ 418
             +T F LPY+++KGKI D  S  ++YSIKIQFNSEE WTKALK+MLTNLKW L W+SSQ
Sbjct: 360 KRDTEFLLPYKMEKGKIID-PSTGNSYSIKIQFNSEEQWTKALKFMLTNLKWGLAWVSSQ 418

Query: 419 F 419
           F
Sbjct: 419 F 419


>AE014297-3447|AAF56227.1|  422|Drosophila melanogaster CG5429-PA
           protein.
          Length = 422

 Score =  466 bits (1148), Expect = e-131
 Identities = 219/421 (52%), Positives = 290/421 (68%), Gaps = 4/421 (0%)

Query: 1   MSDS-KTFVSFSCQRCLQPLKLDDSLNNLGEHTIADLTLQIRRNNEADLDLQ-SSSLDHY 58
           MS++ K  VSF+CQRCLQP+ LD+ L  +  H +A+L+L I  +N   LD Q +SS DH+
Sbjct: 1   MSEAEKQAVSFACQRCLQPIVLDEQLEKISVHAMAELSLPIYGDNGNTLDPQDASSFDHF 60

Query: 59  VPPFRMSESGNGANGFMVISDGWETTSLGHQLHVKATLFDLLSNNSYVDHPLCDECTDTL 118
           VPP+R+++S NG  GFM++SDG +   +     +KA LFD LS+NS +DHPLC+EC D++
Sbjct: 61  VPPYRLTDSINGT-GFMLVSDGRDNKKMSAAFKLKAELFDCLSSNSEIDHPLCEECADSM 119

Query: 119 LELMDNQLKQTEAEWXXXXXXXXXXXXXXXXXXXXXXXXXXXXWKQEQSRXXXXXXXXXX 178
           LE+MD +L+  E EW                             K+ + +          
Sbjct: 120 LEIMDRELRIAEDEWDVYKAYLDELEQQRVAPNVEALDKELDELKRSEQQLLSELKELKK 179

Query: 179 XXRAMNXXXXXXXXXXXXLDKEQDVYWREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEK 238
             +++N            L ++++ YWREYTK+R++LM TED  +  ECQ+AY++ QL+K
Sbjct: 180 EEQSLNDAIAEEEQEREELHEQEESYWREYTKHRRELMLTEDDKRSLECQIAYSKQQLDK 239

Query: 239 LKKTNVFKATFHISDSGQFGIINNFRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINF 298
           L+ TN+F  TFHI  +G FG INNFRLGRLP+  VDWSEINAAWGQTVLLLS+LARKI  
Sbjct: 240 LRDTNIFNITFHIWHAGHFGTINNFRLGRLPSVSVDWSEINAAWGQTVLLLSALARKIGL 299

Query: 299 NFQRYKLVPYGNHSYIEVLEDQKVLPLYGSGGFRFLWDTKFDAAMVAFLDCLQQFKEQVE 358
            F+RY++VP+GNHSY+EVL + + LPLYGSGGF+F WDTKFDAAMVAFLDCL QF+++VE
Sbjct: 300 TFERYRVVPFGNHSYVEVLGENRELPLYGSGGFKFFWDTKFDAAMVAFLDCLTQFQKEVE 359

Query: 359 MGNTGFCLPYRIDKGKIEDTASPPHAYSIKIQFNSEEHWTKALKYMLTNLKWALTWISSQ 418
             +T F LPY+++KGKI D  S  ++YSIKIQFNSEE WTKALK+MLTNLKW L W+SSQ
Sbjct: 360 KRDTEFLLPYKMEKGKIID-PSTGNSYSIKIQFNSEEQWTKALKFMLTNLKWGLAWVSSQ 418

Query: 419 F 419
           F
Sbjct: 419 F 419


>L28945-1|AAA50509.1|  910|Drosophila melanogaster p90 ribosomal S6
           kinase protein.
          Length = 910

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 208 YTKYRKDLMTTEDQMKFYECQLAYTQSQLEKL 239
           +T+  K++M TE+ +KFY  +LA   + L  L
Sbjct: 286 FTRLSKEVMFTEEDVKFYLAELALAMNHLHTL 317


>BT004472-1|AAO42636.1|  892|Drosophila melanogaster SD05277p
           protein.
          Length = 892

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 208 YTKYRKDLMTTEDQMKFYECQLAYTQSQLEKL 239
           +T+  K++M TE+ +KFY  +LA   + L  L
Sbjct: 287 FTRLSKEVMFTEEDVKFYLAELALAMNHLHTL 318


>AE014298-3193|AAF50945.1|  911|Drosophila melanogaster CG17596-PA
           protein.
          Length = 911

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 208 YTKYRKDLMTTEDQMKFYECQLAYTQSQLEKL 239
           +T+  K++M TE+ +KFY  +LA   + L  L
Sbjct: 287 FTRLSKEVMFTEEDVKFYLAELALAMNHLHTL 318


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,901,729
Number of Sequences: 52641
Number of extensions: 730923
Number of successful extensions: 1957
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1946
Number of HSP's gapped (non-prelim): 5
length of query: 427
length of database: 24,830,863
effective HSP length: 87
effective length of query: 340
effective length of database: 20,251,096
effective search space: 6885372640
effective search space used: 6885372640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)