GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000092-TA|BGIBMGA000092-PA|IPR007243|Autophagy protein
Apg6, IPR013819|Lipoxygenase, C-terminal
         (427 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61710.1 68416.m06915 autophagy protein Apg6 family contains ...   165   7e-41
At3g61710.2 68416.m06916 autophagy protein Apg6 family contains ...   103   3e-22
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)...    30   2.6  
At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)...    30   3.4  
At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)...    30   3.4  

>At3g61710.1 68416.m06915 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 517

 Score =  165 bits (400), Expect = 7e-41
 Identities = 104/342 (30%), Positives = 156/342 (45%), Gaps = 20/342 (5%)

Query: 83  TTSLGHQLHVKATLFDLLSNNSYVDHPLCDECTDTLLELMDNQLKQTEAEWXXXXXXXXX 142
           T+     ++V    FD+    + V+ PLC EC   L + ++ +++    +          
Sbjct: 144 TSGFNATINVLTRAFDIARTQTQVEQPLCLECMRVLSDKLEKEVEDVTRDVEAYEACVQR 203

Query: 143 XXXXXXXXXXXXXXXXXXXWKQEQSRXXXXXXXXXXXXRA-MNXXXXXXXXXXXXLDKEQ 201
                                +E+ R             A +N             ++ +
Sbjct: 204 LEGETQDVLSEADFLKEKKKIEEEERKLVAAIEETEKQNAEVNHQLKELEFKGNRFNELE 263

Query: 202 DVYWREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEKLKKTNVFKATFHISDSGQFGIIN 261
           D YW+E+  ++  L+  +++      ++  +Q+ LE L KTNV    F I + G+FG IN
Sbjct: 264 DRYWQEFNNFQFQLIAHQEERDAILAKIEVSQAHLELLNKTNVLIDAFPIRNDGEFGTIN 323

Query: 262 NFRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQ-RYKLVPYGNHSYIEVLEDQ 320
           NFRLGRLP   V+W EINAAWGQ  LLL ++       FQ + K+ P G++  I V  + 
Sbjct: 324 NFRLGRLPAIKVEWDEINAAWGQACLLLHTMCNYFRPKFQCQVKIQPMGSYPRI-VDSNN 382

Query: 321 KVLPLYGSGGFRFLWDTKFDAAMVAFLDCLQQF------KEQVEMGNTGFC--LPYRIDK 372
           +   L+G       W T++D AM  +L CL+ F      K+Q        C  LPY+I+K
Sbjct: 383 ETYELFGP--VNLFWSTRYDKAMTLYLMCLKDFADFANSKDQENNIPPDNCLNLPYKIEK 440

Query: 373 GKIEDTASPPHAYSIKIQFNSEEHWTKALKYMLTNLKWALTW 414
            K+         YSI   FN +E WTKALKY L NLKWAL W
Sbjct: 441 DKV-------LGYSITQSFNKQESWTKALKYTLCNLKWALYW 475


>At3g61710.2 68416.m06916 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 386

 Score =  103 bits (246), Expect = 3e-22
 Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 1/220 (0%)

Query: 83  TTSLGHQLHVKATLFDLLSNNSYVDHPLCDECTDTLLELMDNQLKQTEAEWXXXXXXXXX 142
           T+     ++V    FD+    + V+ PLC EC   L + ++ +++    +          
Sbjct: 144 TSGFNATINVLTRAFDIARTQTQVEQPLCLECMRVLSDKLEKEVEDVTRDVEAYEACVQR 203

Query: 143 XXXXXXXXXXXXXXXXXXXWKQEQSRXXXXXXXXXXXXRA-MNXXXXXXXXXXXXLDKEQ 201
                                +E+ R             A +N             ++ +
Sbjct: 204 LEGETQDVLSEADFLKEKKKIEEEERKLVAAIEETEKQNAEVNHQLKELEFKGNRFNELE 263

Query: 202 DVYWREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEKLKKTNVFKATFHISDSGQFGIIN 261
           D YW+E+  ++  L+  +++      ++  +Q+ LE L KTNV    F I + G+FG IN
Sbjct: 264 DRYWQEFNNFQFQLIAHQEERDAILAKIEVSQAHLELLNKTNVLIDAFPIRNDGEFGTIN 323

Query: 262 NFRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQ 301
           NFRLGRLP   V+W EINAAWGQ  LLL ++       FQ
Sbjct: 324 NFRLGRLPAIKVEWDEINAAWGQACLLLHTMCNYFRPKFQ 363


>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
           identical to SP|O65607 DNA mismatch repair protein MSH3
           (AtMsh3) {Arabidopsis thaliana}
          Length = 1081

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 78  SDGWETTSLGHQLHVKATLFDLLSNNSYVDHPLCD 112
           SDG E+ SL H ++   T++       +V HPLCD
Sbjct: 437 SDGSESGSLFHNMNHTLTVYGSRLLRHWVTHPLCD 471


>At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)
           identical to transcription factor (TGA1) GI:16550 from
           [Arabidopsis thaliana]
          Length = 368

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 47  DLDLQS---SSLDHYVPPFRMSESGNGANGFMVISDGWETTS 85
           D++L+S   +++ HY   FRM  S   A+ F V+S  W T++
Sbjct: 184 DIELRSLVENAMKHYFELFRMKSSAAKADVFFVMSGMWRTSA 225


>At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)
           identical to transcription factor (TGA1) GI:16550 from
           [Arabidopsis thaliana]
          Length = 368

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 47  DLDLQS---SSLDHYVPPFRMSESGNGANGFMVISDGWETTS 85
           D++L+S   +++ HY   FRM  S   A+ F V+S  W T++
Sbjct: 184 DIELRSLVENAMKHYFELFRMKSSAAKADVFFVMSGMWRTSA 225


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,195,692
Number of Sequences: 28952
Number of extensions: 357755
Number of successful extensions: 798
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 789
Number of HSP's gapped (non-prelim): 7
length of query: 427
length of database: 12,070,560
effective HSP length: 83
effective length of query: 344
effective length of database: 9,667,544
effective search space: 3325635136
effective search space used: 3325635136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)