Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000091-TA|BGIBMGA000091-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like, IPR000047|Helix-turn-helix motif,
lambda-like repressor
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    29   1.0  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    29   1.4  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    27   4.2  
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...    27   4.2  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   4.2  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   5.6  
SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc...    26   7.4  
SPBC4C3.04c |||guanyl-nucleotide exchange factor |Schizosaccharo...    26   7.4  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    26   7.4  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   9.7  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    26   9.7  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 32  YEPSQFYAQQELEKQYFSCKKTKDERKTNAIYIDGKSYESQQR-NKRY 78
           ++ S  +  Q+L  QY +     D+    + Y+ G+ Y +QQ+ NK Y
Sbjct: 557 HQQSSSFTNQDLAIQYLTKSLEADDTDAQSWYLIGRCYVAQQKYNKAY 604


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 67  KSYESQQRNKRYINFELKLPPHDDYFTIESDRQN 100
           + Y SQ+R+  Y NFE    P   Y T    R+N
Sbjct: 157 QQYSSQERSSSYNNFEDASSPQSSYHTPTKRRKN 190


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 29  PFNYEPS-QFYAQQELEKQYFSCKKTKDERKTNAIYIDGKSYESQQRNKR 77
           PF+YE   Q   ++ LEKQ  S  ++++  K NA      SY+  +  K+
Sbjct: 430 PFSYEEHRQKIVKERLEKQRASKIRSQNRPKVNAGLASRLSYQENKLRKK 479


>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 39  AQQELEKQYFSCKKTKDERKTNAIYIDGKS 68
           AQQE E+  F  ++++ ER+ N I  +G++
Sbjct: 188 AQQEAERARFLVEQSEQERQANVIRAEGEA 217


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 216 FSPRHHTSLQNLWFKAHYKEAEKVRGRALGAVDKYRLRKKYPLPKT 261
           ++ +    L+N  F+ +YK+    RG+     D +    + PLP T
Sbjct: 15  YNDKSEIVLENKQFEGYYKKQNLFRGKPNDEFDSFMEYMRKPLPTT 60


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 15/68 (22%), Positives = 29/68 (42%)

Query: 16  PSDVTSGSETSLPPFNYEPSQFYAQQELEKQYFSCKKTKDERKTNAIYIDGKSYESQQRN 75
           PS  +  S + L       +   +   L+K +FS ++  +   +N   + G + +  QR 
Sbjct: 463 PSSQSMQSPSKLHSLTSNATDLLSSSSLKKNFFSQQEADEVELSNNYDLQGAAVQYLQRR 522

Query: 76  KRYINFEL 83
            R +  EL
Sbjct: 523 LRMVEDEL 530


>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 177

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 46  QYFSCKKTKDERKTNAIYIDGKSYESQQ-RNKRYINFELKLPPHDDYFTIESDRQNYYDE 104
           +Y S    K  R    +Y D   ++ Q   +K Y + E     H D+ T++ D     DE
Sbjct: 106 KYMSLHVRKSNRAAIHLYRDTLQFDVQGIESKYYADGEDAYAMHKDFSTLKFDTPETNDE 165

Query: 105 LKSCIHN 111
           L   + +
Sbjct: 166 LAKTVQS 172


>SPBC4C3.04c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 100

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 7/61 (11%)

Query: 81  FELKLPPHDDYFTIESDRQNYYDELKSCIHNESALVELKGPTGFEDAEGNERVQFCAENE 140
           F LK P   D  ++     N Y +L +C   E      KGP G+ D++ NE +  C+  +
Sbjct: 47  FLLKDPFAFDNVSVSKPLANNY-KLLACADCE------KGPLGYYDSKNNEYLLLCSLEK 99

Query: 141 N 141
           N
Sbjct: 100 N 100


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 191 LRARALVAYHRGVFQELYAILEAHTFSPRH 220
           +R+R   + H GV+    A L + T +P+H
Sbjct: 82  MRSRVFSSQHHGVYHTRPASLHSRTMAPQH 111


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 340 PQGGLAQALLPNAYYHQLQD 359
           PQG +   +L N Y HQL +
Sbjct: 422 PQGSIVSPILANIYLHQLDE 441


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 86   PPHDDYFTIESDRQNYYDELKSCIHNESALVELK 119
            PPH D ++IE  +Q  YD +KS   N  A V +K
Sbjct: 1059 PPHHDIYSIEDLKQLIYD-MKSA--NPRARVSVK 1089


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,880,934
Number of Sequences: 5004
Number of extensions: 84277
Number of successful extensions: 235
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 12
length of query: 368
length of database: 2,362,478
effective HSP length: 74
effective length of query: 294
effective length of database: 1,992,182
effective search space: 585701508
effective search space used: 585701508
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)