Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000090-TA|BGIBMGA000090-PA|IPR002000|Lysosome-associated
membrane glycoprotein (Lamp)/CD68
         (275 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   3.3  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.3  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 107 DAETLVLSFKDFTLEWFF 124
           D +TLVL+F  FT   FF
Sbjct: 279 DLKTLVLNFPKFTAGGFF 296


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 20  SQASTRRPRVTKYSKTTIAPGGSTESVT 47
           S A+T     T+Y  +  APG S  SV+
Sbjct: 109 SPAATAAATATEYKYSAAAPGPSDPSVS 136


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.132    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,139
Number of Sequences: 317
Number of extensions: 2148
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 275
length of database: 114,650
effective HSP length: 56
effective length of query: 219
effective length of database: 96,898
effective search space: 21220662
effective search space used: 21220662
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)