Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000090-TA|BGIBMGA000090-PA|IPR002000|Lysosome-associated
membrane glycoprotein (Lamp)/CD68
         (275 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47260| Best HMM Match : ig (HMM E-Value=4.3e-13)                    31   1.0  
SB_42833| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 29   3.1  
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_34880| Best HMM Match : Methuselah_N (HMM E-Value=9.6)              29   5.5  
SB_7994| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.6  

>SB_47260| Best HMM Match : ig (HMM E-Value=4.3e-13)
          Length = 402

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 44  ESVTERSLVTATYRLQGGGGETCILLT-VDALLDISYVTKLNERADAN--TFVPNNANVG 100
           +++  R L+ +   L  GG  TC+L T  +  L+ SY+  +N+ +     + + ++ N  
Sbjct: 75  DAINTRMLILSNLLLADGGRYTCVLKTESNRTLNTSYMLTINDHSQNKKPSIITHSINQT 134

Query: 101 GAC-KDGDAETLVLSFKDFTLEWFFAKTPGGERWYAESMKLSYNSSSRI 148
               K       + SF    +EWF   T       A S    +++ SR+
Sbjct: 135 VIIGKTATFTCTITSFSTPYIEWFLHSTRYQNTAQANSNTSYFHTRSRL 183


>SB_42833| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 641

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 172 TPVGKSYFCPDETVIELTEEDPS-NPTLAHKAK 203
           T  G +YF PD  V + TE DP   P L  KA+
Sbjct: 482 THKGNTYFGPDARVAKTTEPDPPIQPNLRRKAR 514


>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3610

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 8/101 (7%)

Query: 34  KTTIAPGGSTESVTERSLVTATYRLQGGGGETCILLTVDALLDISYVTKLNERADANTFV 93
           K  + PGG   +V   S    TYR+  G  E      +D+L       K  +  D  TF 
Sbjct: 723 KEGVLPGGRVTTVKMTSSRLMTYRILEGNDEG--YFRMDSLSGDLLALKELDYEDVRTF- 779

Query: 94  PNNANVGGACKDGDAE--TLVLSFKDFT-LEWFFAKTPGGE 131
                + G   DG+A+  TLV++ +D       FA   GGE
Sbjct: 780 --TMRIKGQDTDGNADVVTLVVNLEDVNDCSPVFAGEVGGE 818


>SB_34880| Best HMM Match : Methuselah_N (HMM E-Value=9.6)
          Length = 343

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 134 YAESMKLSYNSSSRIL--EHAANQGRRVTLTTDSRELLF 170
           Y E +K++  +SS+ L   H A+   RVT TT S+ LLF
Sbjct: 29  YDEEVKVTNTTSSQSLLFMHQADWQMRVTKTTSSQSLLF 67


>SB_7994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 907

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 175 GKSYF--CPDETVIELTEEDPSNPTLAHKAKLYLRQMRLQPFMFK 217
           GKS    C D TV+E+   DP     +    L L  +++  F+FK
Sbjct: 428 GKSLLVSCKDGTVLEVEAPDPGEHDTSKTFHLPLTNLKITEFLFK 472


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.132    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,238,493
Number of Sequences: 59808
Number of extensions: 316443
Number of successful extensions: 667
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 7
length of query: 275
length of database: 16,821,457
effective HSP length: 81
effective length of query: 194
effective length of database: 11,977,009
effective search space: 2323539746
effective search space used: 2323539746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)