GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000090-TA|BGIBMGA000090-PA|IPR002000|Lysosome-associated
membrane glycoprotein (Lamp)/CD68
         (275 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    32   0.078
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    28   1.3  
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     27   3.9  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   6.8  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   8.9  

>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 32.3 bits (70), Expect = 0.078
 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 86  RADANTFVPNNANVGGACKDGDAETLVLSFKDFTLEWFFAKTPGGERWYAESMKLSYNSS 145
           R  +NT   N ++ GG C   D++   LS      +W F K   G    ++S     NSS
Sbjct: 102 RQYSNTDDINPSDFGGQCAILDSQNFTLSNASTKSKWSFTK--HGSNTPSDSSSPLCNSS 159

Query: 146 SRI---LEHAANQGRRVTLTTDSRELLFPTPVGKSYFCPDETVIELTEEDPSNPTLAH 200
            R+   L       R V L+   + L  PT  G S    D T + ++    ++P+ ++
Sbjct: 160 KRVVGMLRRFLPSSRMVRLSKAHQPLRIPT-TGVSLDSADLTPLSVSTSHLNHPSTSN 216


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 1957

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 9  VVCSAHSLQLDSQASTRRPRVTKYSKTTIAPGGSTESVTERS 50
          +V SA S  +DS   T RP +++ S   +A  G T S  E S
Sbjct: 22 LVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQHEDS 63


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 122 WFFAKTPGG--ERWYAESMKLSYNSSSRILEHAA 153
           WF A+TPGG  E  Y + +K++  ++  I  H A
Sbjct: 199 WFGARTPGGVSEELYRKMVKIARANNIGITMHCA 232


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 31  KYSKTTIAPGGSTESVTERSLVTATYRLQGGGGETCIL--------LTVDALLDISYVTK 82
           K   T  A G   E+  E+ L+T+T+       + C+         L       +     
Sbjct: 635 KLDVTKRAFGREIENSNEKELLTSTFLSPSAESQVCLAEIKTIRPGLVPKKQFSVDQNNV 694

Query: 83  LNERADANTFVPNNANVGGACKDGDAETLVLSFKD 117
           +++  D +   P+N+ +     DGDA +  ++  D
Sbjct: 695 ISDNTDCSLPKPSNSKLSSISSDGDASSNRMAVPD 729


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 66   CILLTVDALLDISYVTKLNERADANTFVPNNANVGGACKDGDAETLVLSFKD 117
            C  L+V  LLDIS   + N   D NT+  +  NV         ET+  SFK+
Sbjct: 1046 CKSLSV-GLLDISNWDEWNNYFDLNTYADSLRNVQFPYSSYIEETIGYSFKN 1096


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.132    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,107,635
Number of Sequences: 5004
Number of extensions: 42079
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 5
length of query: 275
length of database: 2,362,478
effective HSP length: 72
effective length of query: 203
effective length of database: 2,002,190
effective search space: 406444570
effective search space used: 406444570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)