GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000090-TA|BGIBMGA000090-PA|IPR002000|Lysosome-associated
membrane glycoprotein (Lamp)/CD68
         (275 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0231 - 16636377-16636403,16636590-16636645,16636793-166368...    31   1.3  
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78...    29   4.1  
12_02_0173 - 14910492-14912081                                         29   5.4  
10_08_0802 + 20680685-20681059,20681218-20681353,20682047-206821...    28   7.1  

>02_03_0231 -
           16636377-16636403,16636590-16636645,16636793-16636853,
           16637590-16637649,16638007-16638096,16638775-16638906,
           16639016-16639293,16639916-16639949,16640036-16640105,
           16641170-16641282,16641654-16641836,16642106-16642283,
           16642958-16643142,16643347-16643477,16643620-16643772,
           16643849-16643995,16644662-16644737
          Length = 657

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 12  SAHSLQLDSQASTRRPRVTKYSKTTIAPGGSTESVTER 49
           S+ SL  DS  S + P   +Y  ++  PG ST S +ER
Sbjct: 446 SSESLPADSSLSRKVPSSGEYVNSSQGPGSSTSSTSER 483


>06_01_0094 +
           779097-779155,779882-781019,781732-782115,782842-783060
          Length = 599

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 126 KTPGGERWYAESMKLSYNSSSRILEHAA 153
           K P   RWY+ S+  S NSSS +   AA
Sbjct: 450 KFPAISRWYSVSVSTSINSSSNLFSSAA 477


>12_02_0173 - 14910492-14912081
          Length = 529

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)

Query: 130 GERWYAESMKLSYNSSSRILEHAANQGRRVTLTTDSRELLFP 171
           GERW+A+   +S+  S+R++  A      V L  ++R  L P
Sbjct: 135 GERWFAQRKLVSHEFSARVMREAVG----VALEREARARLLP 172


>10_08_0802 +
           20680685-20681059,20681218-20681353,20682047-20682180,
           20682722-20682827,20683227-20683312,20683648-20683836,
           20684349-20684522,20684638-20684751,20684887-20685141
          Length = 522

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 97  ANVGGACKDGDAETLVLSF--KDFTLEWFFAKTPGGERWYAESMKLSYNSSSRILEHAAN 154
           AN+ G C DGD   LV  F   D   +  F        W A  ++++YN  +  LE+ +N
Sbjct: 140 ANLIGYCCDGDERLLVAEFMPNDTLAKHLFHWENKAIEW-AMRLRVAYN-IAEALEYCSN 197

Query: 155 QGRRVTLTTDSRELLF 170
           + R +    ++  +LF
Sbjct: 198 EERPLYHDLNAYRVLF 213


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.132    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,529,807
Number of Sequences: 37544
Number of extensions: 304088
Number of successful extensions: 700
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 698
Number of HSP's gapped (non-prelim): 4
length of query: 275
length of database: 14,793,348
effective HSP length: 81
effective length of query: 194
effective length of database: 11,752,284
effective search space: 2279943096
effective search space used: 2279943096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)