GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000090-TA|BGIBMGA000090-PA|IPR002000|Lysosome-associated
membrane glycoprotein (Lamp)/CD68
         (275 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023538-1|AAY84938.1|  279|Drosophila melanogaster IP09895p pro...   191   8e-49
AE014296-3320|AAN11627.1|  295|Drosophila melanogaster CG32225-P...   186   2e-47
AE014296-3677|AAF51832.1|  305|Drosophila melanogaster CG11425-P...    38   0.020
AY070618-1|AAL48089.1|  318|Drosophila melanogaster RE72002p pro...    32   0.75 
AE014134-3511|AAF57215.3|  318|Drosophila melanogaster CG3305-PA...    32   0.99 
AE013599-1566|AAF58471.3| 1822|Drosophila melanogaster CG8771-PA...    31   2.3  

>BT023538-1|AAY84938.1|  279|Drosophila melanogaster IP09895p
           protein.
          Length = 279

 Score =  191 bits (466), Expect = 8e-49
 Identities = 102/273 (37%), Positives = 144/273 (52%), Gaps = 7/273 (2%)

Query: 4   VFAVLVVCSAHSLQLDSQASTRRPRVTKYSKTTIAPGGSTESVTERSLVTATYRLQGGGG 63
           +F +L+V +A  LQL S  +T+ PRV+KY  TT +P  S+ +        + YR     G
Sbjct: 13  LFPLLLVTAAQGLQL-SAFTTKTPRVSKY--TTKSPSASSMN---HDATASLYRFNATNG 66

Query: 64  ETCILLTVDALLDISYVTKLNERADANTFVPNNANVGGACKDGDAETLVLSFKDFTLEWF 123
            TCIL+ VD L+ I Y  KLNE  +A+ ++P++  + G C + + E L + FK F L   
Sbjct: 67  ITCILMQVDGLISIKYRNKLNEDVEADLYMPDDPQLSGECVESNMEILTMDFKGFRLSMT 126

Query: 124 FAKTPGGERWYAESMKLSYNSSSRILEHAANQGRRVTLTTDSR-ELLFPTPVGKSYFCPD 182
           F K+ GGE WY    +L+Y+SS+ + EH       V LT+ ++  + FPTPVGKSY C  
Sbjct: 127 FKKSSGGEGWYINLFELTYSSSNWLFEHPDRPNLDVRLTSPAQTPMYFPTPVGKSYVCDK 186

Query: 183 ETVIELTEEDPSNPTLAHKAKLYLRQMRLQPFMFKRSGEFGPAWHCXXXXXXXXXXXXXX 242
           E  + +     S     H AKLYLR M +Q FMFK SG++GP++HC              
Sbjct: 187 EQTVIMYAPHDSGDLSGHIAKLYLRDMHMQSFMFKDSGKWGPSFHCSATGSYRDETAPLA 246

Query: 243 XXXXXXXXXXXXXXXXXIWRYLKVKKVQYDTME 275
                             WRY K+KKVQY +ME
Sbjct: 247 VGTALAIAVLLTISGYGGWRYFKIKKVQYGSME 279


>AE014296-3320|AAN11627.1|  295|Drosophila melanogaster CG32225-PA
           protein.
          Length = 295

 Score =  186 bits (454), Expect = 2e-47
 Identities = 100/269 (37%), Positives = 140/269 (52%), Gaps = 7/269 (2%)

Query: 8   LVVCSAHSLQLDSQASTRRPRVTKYSKTTIAPGGSTESVTERSLVTATYRLQGGGGETCI 67
           L + +A  LQL S  +T+ PRV+KY  TT +P  S+ +        + YR     G TCI
Sbjct: 33  LFMTAAQGLQL-SAFTTKTPRVSKY--TTKSPSASSMN---HDATASLYRFNATNGITCI 86

Query: 68  LLTVDALLDISYVTKLNERADANTFVPNNANVGGACKDGDAETLVLSFKDFTLEWFFAKT 127
           L+ VD L+ I Y  KLNE  +A+ ++P++  + G C + + E L + FK F L   F K+
Sbjct: 87  LMQVDGLISIKYRNKLNEDVEADLYMPDDPQLSGECVESNMEILTMDFKGFRLSMTFKKS 146

Query: 128 PGGERWYAESMKLSYNSSSRILEHAANQGRRVTLTTDSR-ELLFPTPVGKSYFCPDETVI 186
            GGE WY    +L+Y+SS+ + EH       V LT+ ++  + FPTPVGKSY C  E  +
Sbjct: 147 SGGEGWYINLFELTYSSSNWLFEHPDRPNLDVRLTSPAQTPMYFPTPVGKSYVCDKEQTV 206

Query: 187 ELTEEDPSNPTLAHKAKLYLRQMRLQPFMFKRSGEFGPAWHCXXXXXXXXXXXXXXXXXX 246
            +     S     H AKLYLR M +Q FMFK SG++GP++HC                  
Sbjct: 207 IMYAPHDSGDLSGHIAKLYLRDMHMQSFMFKDSGKWGPSFHCSATGSYRDETAPLAVGTA 266

Query: 247 XXXXXXXXXXXXXIWRYLKVKKVQYDTME 275
                         WRY K+KKVQY +ME
Sbjct: 267 LAIAVLLTISGYGGWRYFKIKKVQYGSME 295


>AE014296-3677|AAF51832.1|  305|Drosophila melanogaster CG11425-PA
           protein.
          Length = 305

 Score = 37.5 bits (83), Expect = 0.020
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 137 SMKLSYNSSSRILEHAANQGRRVTLTTDSRELLFPTPVGKSYFCPDETVIELTEEDPSNP 196
           S  LS     R+L      G  + L  + R L  P P  + +FC DE+++    E+  +P
Sbjct: 2   SFNLSLRPPIRLLVDLVLLGLLIVLVENFRRLWGP-PTKRGFFCDDESLMYPYHENTVSP 60

Query: 197 TLAHKAKLYL 206
           TL H   LYL
Sbjct: 61  TLLHWLGLYL 70


>AY070618-1|AAL48089.1|  318|Drosophila melanogaster RE72002p
           protein.
          Length = 318

 Score = 32.3 bits (70), Expect = 0.75
 Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 21/195 (10%)

Query: 12  SAHSLQLDSQASTRRPRVTKYSKTTIAPGGSTESV----TERSLVTATYRLQ-------G 60
           S+ S    S  +T +P +T  S +TI P  +T S     T   +++ T   Q       G
Sbjct: 51  SSSSTISTSSTTTEKP-ITTRSTSTITPRSTTPSTESPSTTAPVISTTIAPQPYPQPSIG 109

Query: 61  GGGETCILLTVDALLDISYVTKLNERADANTFVPNNANVGGA-CKDGDAETLVLSFKDFT 119
               +CI+L + A L+ +Y  +          +P+NA+V  A CK    + + L +   T
Sbjct: 110 AWNTSCIMLQMAAQLNFTYEAREGNFTTGLDNIPSNASVEDAECKSQTTQFIHLIWGPET 169

Query: 120 ----LEWFFAKTPGGERWYAESMKLSYNSSSRILEHAANQGRRVTLTTDSRELLFPTPVG 175
               L  +F K+   +      M++            A + + V L T S +  F TP  
Sbjct: 170 SKQSLIMYFNKS--NDTTVLSFMQIHLALLPEDFPD-AKENQTVQLITRS-DGAFKTPEN 225

Query: 176 KSYFCPDETVIELTE 190
            SY C     I +TE
Sbjct: 226 MSYHCTRVQKINMTE 240


>AE014134-3511|AAF57215.3|  318|Drosophila melanogaster CG3305-PA
           protein.
          Length = 318

 Score = 31.9 bits (69), Expect = 0.99
 Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 21/195 (10%)

Query: 12  SAHSLQLDSQASTRRPRVTKYSKTTIAPGGSTESV----TERSLVTATYRLQ-------G 60
           S+ S    S  +T +P +T  S +TI P  +T S     T   +++ T   Q       G
Sbjct: 51  SSSSTISTSSTTTEKP-ITTRSTSTITPRSTTPSTESPSTTAPVISTTIAPQPYPQPSIG 109

Query: 61  GGGETCILLTVDALLDISYVTKLNERADANTFVPNNANVGGA-CKDGDAETLVLSFKDFT 119
               +CI+L + A L+ +Y  +          +P+NA+V  A CK    + + L +   T
Sbjct: 110 AWNTSCIMLQMAAQLNFTYEAREGNFTTGLYNIPSNASVEDAECKSQTTQFIHLIWGPET 169

Query: 120 ----LEWFFAKTPGGERWYAESMKLSYNSSSRILEHAANQGRRVTLTTDSRELLFPTPVG 175
               L  +F K+   +      M++            A + + V L T S +  F TP  
Sbjct: 170 SKQSLIMYFNKS--NDTTVLSFMQIHLALLPEDFPD-AKENQTVQLITRS-DGAFKTPEN 225

Query: 176 KSYFCPDETVIELTE 190
            SY C     I +TE
Sbjct: 226 MSYHCTRVQKINMTE 240


>AE013599-1566|AAF58471.3| 1822|Drosophila melanogaster CG8771-PA
            protein.
          Length = 1822

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 141  SYNSSSRILEHAANQGRRVTLTTDSRELLFPTPVGKSYFCPDE-TVIELTEEDPSNPTLA 199
            +++ SS +   AA QG  +T + D R+ L+P       F  DE   IEL    P  PT  
Sbjct: 1735 NFDMSSDLSPIAAAQGAAMTTSLDGRKRLYPAQQAGDAFLEDELAAIELQYFPP--PTEP 1792

Query: 200  HKAKLYLRQMRLQPFMFKRSGEFGPAWHC 228
               +L   Q+  + ++   S  F    HC
Sbjct: 1793 GYCELSQVQVVEEDYLQLMSALFNVMPHC 1821


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.132    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,258,516
Number of Sequences: 52641
Number of extensions: 490787
Number of successful extensions: 1081
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1072
Number of HSP's gapped (non-prelim): 6
length of query: 275
length of database: 24,830,863
effective HSP length: 84
effective length of query: 191
effective length of database: 20,409,019
effective search space: 3898122629
effective search space used: 3898122629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)